Miyakogusa Predicted Gene

Lj5g3v2152700.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2152700.3 Non Chatacterized Hit- tr|I3SCE2|I3SCE2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,42.2,5e-17,no
description,Nucleic acid-binding, OB-fold; DUF223,Domain of unknown
function DUF223; Nucleic acid,CUFF.57178.3
         (294 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        64   2e-10
Glyma11g27090.1                                                        55   6e-08

>Glyma18g33200.1 
          Length = 126

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 35  VRVLRVWDMFPVGEPSK------PYAIHVVLIDVEGVKIEGIIKKGMLKKFRGELVEGSV 88
           VRV+ +W +  V    +      P ++ +VL+D +G ++ G +K+  + KF   L EG  
Sbjct: 2   VRVVHLWMVSDVSNNKQTSSSKIPLSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQEGKW 61

Query: 89  YRITYFNVISNSGAFRATEHGFKIVFNSQTKVRII---SMWNTRARYLP 134
           Y I +F V  N G +R T H +KIVF   TKV ++   S+ N+   ++P
Sbjct: 62  YSIQFFGVAENGGIYRTTHHKYKIVFQYSTKVALVDNASIPNSMYDFVP 110


>Glyma11g27090.1 
          Length = 206

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 12/120 (10%)

Query: 17  LRSICIGIDPKKDTWRVKVRVLRVWDMFPVGEPSKPYAI-HVVLIDVEGVKIEGIIKKGM 75
           L+SI   ID +K+T ++ VRV+ +W +     P  P +I  ++L+D +G KI   ++   
Sbjct: 1   LKSIA-EIDDQKETCKIIVRVINMWTI-----PRSPKSIVELILVDKKGDKILAQMRNVD 54

Query: 76  LKKFRGELVEGSVYRITYFNVISNSGAFRATEHGFKIVFNSQTKVRIIS-----MWNTRA 130
           ++        G  Y I  F V  NSG ++AT HGFKI F   TK+ ++S     +W + A
Sbjct: 55  VQLDNVIFDVGHTYVIKNFEVEKNSGHYKATRHGFKINFVKTTKMLLVSIMSCTLWESLA 114