Miyakogusa Predicted Gene

Lj5g3v2152700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2152700.1 tr|G7LDT6|G7LDT6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_8g062030 PE=4
SV=1,34.25,2e-18,Rep_fac-A_C,Replication factor A, C-terminal; Nucleic
acid-binding proteins,Nucleic acid-binding, OB,CUFF.57178.1
         (177 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g12770.1                                                        55   5e-08
Glyma07g33700.1                                                        52   2e-07
Glyma18g54000.1                                                        50   1e-06
Glyma01g23480.1                                                        49   4e-06

>Glyma10g12770.1 
          Length = 302

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 36  TSKLFVNPGFEVVSSFTNRLYAGGIRT-------DEPVQFLRPRVPEVNMRQDMLNLHPK 88
            SKL +N     +  F  RL   G+         D+    L  R  +++ +   L+    
Sbjct: 26  ASKLLINEHVLEIQEFRERLLDSGVEVSPVFPPGDQGSSQL-SRASKLSSKDAFLSKAKA 84

Query: 89  KTISQLSESDEEAIYIVHGGIVA-ALKNEAWTYPSCI-CHGELIVRTGVYECVTCQRFFY 146
           KTIS++++  E+ + +  G I    + N +W YP+CI CH +  ++TG + C  C +   
Sbjct: 85  KTISEINDISEDVVCVTVGTISKIVMDNHSWCYPACIQCHRKTDIQTGPFTC-GCGKDND 143

Query: 147 TMIRRYRVNVEVFDGHESVVFV 168
             + RYRV V V   ++S  F+
Sbjct: 144 QPVLRYRVEVMVCQNNDSSKFL 165


>Glyma07g33700.1 
          Length = 311

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 13/168 (7%)

Query: 13  VLILQFIQVRNVNG--LLFMRTLPHTSKLFVNPGFEVVSSFTNRLYAGGIRT-------D 63
           V+IL   ++++  G  L  +      SKL +N     +  F  RL   G++        D
Sbjct: 37  VIILTHARIKDAQGSYLASVSNSFKASKLLINEPILEIQEFRERLLDLGVKVSPVLPPGD 96

Query: 64  EPVQFLRPRVPEVNMRQDMLNLHPKKTISQLSESDEEAIYIVHGGIVA-ALKNEAWTYPS 122
           +    L  R  +++ +   L+    KTI +++   E+ + +  G I    + N +W YP+
Sbjct: 97  QGSSQL-SRGSQLSSKDAFLSKVEAKTIYEINGISEDVVCVTVGTISKIVMNNHSWCYPA 155

Query: 123 CI-CHGELIVRTGVYECVTCQRFFYTMIRRYRVNVEVFDGHESVVFVL 169
           C+ CH +  ++TG + C  C +     + RYRV V V   ++S  F+L
Sbjct: 156 CVQCHRKTDIQTGPFTC-GCGKNNDQPVLRYRVEVMVSQNNDSSKFLL 202


>Glyma18g54000.1 
          Length = 292

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 5   CSNWTKRPVLILQFIQVRNVNGLL-----FMRTLPHTSKLFVNPGFEVVSSFTNRLYAGG 59
           C+ W    +  L ++  R  +GL+      +      SKL +N     +  F  RL   G
Sbjct: 13  CTLWENYCMQFLAYLNERGNDGLIGSYPTSVSNSLKASKLLINEPVLEIQEFRERLLDLG 72

Query: 60  IRTDEPVQFLRP---------RVPEVNMRQDMLNLHPKKTISQLSESDEEAIYIVHGGIV 110
           +    PV  L P         R  +++ +   L+    KTI +++   E+ + ++ G I 
Sbjct: 73  VEV-SPV--LPPGDQGSSQLSRASQLSSKDAFLSKAEAKTIFEINGISEDIVCVMVGTIS 129

Query: 111 A-ALKNEAWTYPSCI-CHGELIVRTGVYECVTCQRFFYTMIRRYRVNV 156
              + N +W Y +C+ CHG++ ++TG + C  C +     + RYRV V
Sbjct: 130 KIVMDNHSWCYLACVQCHGKIDIQTGPFTC-GCDKDNDQPVLRYRVEV 176


>Glyma01g23480.1 
          Length = 316

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 72  RVPEVNMRQDMLNLHPKKTISQLSESDEEAIYIVHGGIVA-ALKNEAWTYPSCI-CHGEL 129
           R  +++ +   L+    KTIS+++   E+ + +    I    + N +W YP+CI CH + 
Sbjct: 105 RASQLSSKDAFLSKSEAKTISEINGISEDVVCVTMDTISKIVVDNHSWCYPACIQCHRKT 164

Query: 130 IVRTGVYECVTCQRFFYTMIRRYRVNVEVFDGHESVVFVL 169
            ++TG + C  C +     + RYRV V V   ++S  F+L
Sbjct: 165 YIQTGPFTC-GCGKDNDQPVLRYRVEVMVSQNNDSSKFLL 203