Miyakogusa Predicted Gene

Lj5g3v2057420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2057420.1 tr|B9HHH4|B9HHH4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_719300 PE=4
SV=1,31.51,0.0000004,seg,NULL,CUFF.56568.1
         (282 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28180.1                                                       283   1e-76
Glyma10g39560.1                                                       259   2e-69

>Glyma20g28180.1 
          Length = 252

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/238 (64%), Positives = 175/238 (73%), Gaps = 5/238 (2%)

Query: 36  MVSLEPVQGNPRSIDAPSSPRISFSAEFLDDENFISISPNPVYERDHQEKEQRN---PEF 92
           MVSLEP++GN RS D PSSPRISFSAEFLD+ NFISISPN  YERD +++ +R     EF
Sbjct: 1   MVSLEPIEGNLRSSDPPSSPRISFSAEFLDENNFISISPNAEYERDQEKERERARNAAEF 60

Query: 93  EFLSSKGSNNNTVVTADELFFEGKLLPFWQMQHLEKLNKISLKPKDERXXXXXXXX-XXX 151
           EFLS+  S+NNTV+TADELFFEGKLLPFWQMQHLEKL+KI+LK K+              
Sbjct: 61  EFLSNNTSSNNTVLTADELFFEGKLLPFWQMQHLEKLSKINLKTKEGEEEELEEEVIVVS 120

Query: 152 XXXSNSNKEDSSRVNNWFVDDDPSPRPPKCTVLWKELLRLKKQRXXXXXXXXXXXXXXXX 211
                 +  +S+   NWFVDDDPSPRPPKCTVLWKELLRLKKQR                
Sbjct: 121 NNNKEDSNSNSNSRVNWFVDDDPSPRPPKCTVLWKELLRLKKQRASSLSPSSSSSSSSSS 180

Query: 212 XXXLGDVAAKEGKDGTRSKD-QQHVKRLKKGLERTRSATIRIRPMINVPICTQVKSSA 268
              LGDVAAKEGK+G+RS + +QHVKR+KKGLER RSATIRIRPMINVPICTQVKSSA
Sbjct: 181 ASSLGDVAAKEGKEGSRSSNKEQHVKRVKKGLERARSATIRIRPMINVPICTQVKSSA 238


>Glyma10g39560.1 
          Length = 257

 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/243 (66%), Positives = 177/243 (72%), Gaps = 10/243 (4%)

Query: 36  MVSLEPVQGNPRSIDAPSSPRISFSAEFLDDENFISISPNPVYERDHQEKEQ---RNP-E 91
           MVSLEP++GN RS DAPSSPRISFSAEFLD+ NFISISPN  YE   QEKE+   RN  E
Sbjct: 1   MVSLEPIEGNLRSSDAPSSPRISFSAEFLDENNFISISPNAEYEGPDQEKERERARNAAE 60

Query: 92  FEFLSSKGSNNNTVVTADELFFEGKLLPFWQMQHLEKLNKISLKPK-----DERXXXXXX 146
           FEFLS+  SNNNTVVTADELFFEGKLLPFWQMQHLEKL+KI+LK K     +E       
Sbjct: 61  FEFLSNNTSNNNTVVTADELFFEGKLLPFWQMQHLEKLSKINLKTKEGEEEEEEELEEEV 120

Query: 147 XXXXXXXXSNSNKEDSSRVNNWFVDDDPSPRPPKCTVLWKELLRLKKQRXXXXXXXXXXX 206
                    ++N  +SS   NWFVDDDPSPRPPKCTVLWKELLRLKKQR           
Sbjct: 121 VVVSNNNKEDNNNSNSSSRVNWFVDDDPSPRPPKCTVLWKELLRLKKQRASSLSPSSSSS 180

Query: 207 XXXXXXXXLGDVAAKEGKDGTRSKD-QQHVKRLKKGLERTRSATIRIRPMINVPICTQVK 265
                   LGDVAAKEG   + +K+ QQHVKR+KKGLERTRSATIRIRPMINVPICTQVK
Sbjct: 181 SSSSSASSLGDVAAKEGSRSSSNKEHQQHVKRVKKGLERTRSATIRIRPMINVPICTQVK 240

Query: 266 SSA 268
           SSA
Sbjct: 241 SSA 243