Miyakogusa Predicted Gene

Lj5g3v2045000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2045000.1 Non Chatacterized Hit- tr|I3S5R5|I3S5R5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.06,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION
SUBUNIT (SOH1),Media,CUFF.56488.1
         (206 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g38750.2                                                       306   1e-83
Glyma10g38750.1                                                       306   1e-83
Glyma20g28990.1                                                       298   2e-81

>Glyma10g38750.2 
          Length = 205

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/206 (72%), Positives = 157/206 (76%), Gaps = 2/206 (0%)

Query: 1   MASKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60
           MASK + ENSTDT+PS PKNIYKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKIESENSTDTSPSSPKNIYKDPDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLE LQNANFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPM 180
           NYRNNRLKHILPR                                           PSPM
Sbjct: 121 NYRNNRLKHILPR--SLPELSATPAAPASTSSQAPVSALPPVPATSVAVTATPSQAPSPM 178

Query: 181 PYGIPPGSGLAKSDMRNPTVDRRRRK 206
           PYG+PPGSGLAK+DMRNPTVD RR++
Sbjct: 179 PYGMPPGSGLAKNDMRNPTVDNRRKR 204


>Glyma10g38750.1 
          Length = 205

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/206 (72%), Positives = 157/206 (76%), Gaps = 2/206 (0%)

Query: 1   MASKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60
           MASK + ENSTDT+PS PKNIYKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKIESENSTDTSPSSPKNIYKDPDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLE LQNANFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPM 180
           NYRNNRLKHILPR                                           PSPM
Sbjct: 121 NYRNNRLKHILPR--SLPELSATPAAPASTSSQAPVSALPPVPATSVAVTATPSQAPSPM 178

Query: 181 PYGIPPGSGLAKSDMRNPTVDRRRRK 206
           PYG+PPGSGLAK+DMRNPTVD RR++
Sbjct: 179 PYGMPPGSGLAKNDMRNPTVDNRRKR 204


>Glyma20g28990.1 
          Length = 206

 Score =  298 bits (764), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 156/206 (75%), Gaps = 1/206 (0%)

Query: 1   MASKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60
           MASK + ENSTDT+PS PKNIYKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKIESENSTDTSPSSPKNIYKDPDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLE LQNANFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPM 180
           NYRNNRLKHILPR                                           PSPM
Sbjct: 121 NYRNNRLKHILPR-SLPEPATPAAPAPASTPSQAPVSALPPVPATSVAVTAAPSQAPSPM 179

Query: 181 PYGIPPGSGLAKSDMRNPTVDRRRRK 206
           PY +PPGSGLAK+DMRNPTVD RR++
Sbjct: 180 PYVMPPGSGLAKNDMRNPTVDNRRKR 205