Miyakogusa Predicted Gene

Lj5g3v2033940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2033940.1 tr|Q32ZJ5|Q32ZJ5_SOLTU RAR1-like protein
(Fragment) OS=Solanum tuberosum PE=4
SV=1,68.49,5e-19,CHORD,Cysteine/histidine-rich domain; RAR1,NULL;
CYSTEINE AND HISTIDINE-RICH DOMAIN (CHORD)-CONTAINI,CUFF.56483.1
         (184 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g38720.1                                                       295   1e-80
Glyma20g29020.2                                                       254   3e-68

>Glyma10g38720.1 
          Length = 223

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/183 (78%), Positives = 152/183 (83%), Gaps = 1/183 (0%)

Query: 2   KEWSCCKKRSHDFSLFLQIPGCKTGKHTTEKQVIAPVKKXXXXXXXXXXXXXXXXKDSCS 61
           KEWSCCKKRSHDFSLFL+IPGCKTGKHTT KQVI PVKK                KDSC 
Sbjct: 42  KEWSCCKKRSHDFSLFLEIPGCKTGKHTTVKQVITPVKKNTMPSPTAVCSTNASSKDSCP 101

Query: 62  RCRQGFFCSDHGSQSKAVNIVGDKSVNRAGDAPAVNSSIVQAPKPPKKIVDINEPQTCKN 121
           RC+QGFFCSDHGSQSK  NI+GDK+ N AGDA   N+S V APKP KKIVDINEPQ CKN
Sbjct: 102 RCQQGFFCSDHGSQSKPANIIGDKAANLAGDASVDNNSSVHAPKP-KKIVDINEPQVCKN 160

Query: 122 KGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWHNAD 181
           KGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCD+HVKEFDEF+SIPPC KGWHNAD
Sbjct: 161 KGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCAKGWHNAD 220

Query: 182 PDS 184
           P+S
Sbjct: 221 PES 223



 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 119 CKNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWH 178
           C+  GC   F E DN D  C YH  P +FHD  + W CC     +F  F+ IP C  G H
Sbjct: 10  CQRIGCDAMFSEDDNPDGCCRYHDSP-IFHDGTKEWSCCKKRSHDFSLFLEIPGCKTGKH 68

Query: 179 NA 180
             
Sbjct: 69  TT 70


>Glyma20g29020.2 
          Length = 166

 Score =  254 bits (649), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/167 (73%), Positives = 134/167 (80%), Gaps = 1/167 (0%)

Query: 18  LQIPGCKTGKHTTEKQVIAPVKKXXXXXXXXXXXXXXXXKDSCSRCRQGFFCSDHGSQSK 77
           + I  CKTGKHTT KQVI PVKK                K+SC RCRQGFFCS+HGSQSK
Sbjct: 1   MSISRCKTGKHTTVKQVITPVKKNTMPSPTAVSSTNASSKESCPRCRQGFFCSNHGSQSK 60

Query: 78  AVNIVGDKSVNRAGDAPAVNSSIVQAPKPPKKIVDINEPQTCKNKGCGQTFKEKDNHDTA 137
            VN+VGDK+ N AGD  A N+S V+APKP KKIVDINE Q CKNKGCGQTFKEKDNHDTA
Sbjct: 61  PVNVVGDKAANLAGDVSADNNSSVEAPKP-KKIVDINEAQVCKNKGCGQTFKEKDNHDTA 119

Query: 138 CSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWHNADPDS 184
           C+YHPGPAVFHDRMRGWKCCD+HVKEFDEF+SIPPC KGWHNADP+S
Sbjct: 120 CNYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCAKGWHNADPES 166