Miyakogusa Predicted Gene

Lj5g3v1972310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1972310.1 tr|Q6IP64|Q6IP64_XENLA MGC78924 protein
OS=Xenopus laevis GN=polr3e PE=2 SV=1,26.03,7e-18,Sin_N,DNA-directed
RNA polymerase III subunit Rpc5; DNA-DIRECTED RNA POLYMERASES III 80
KDA POLYPEPT,CUFF.56373.1
         (656 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01200.1                                                       760   0.0  

>Glyma11g01200.1 
          Length = 680

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/609 (63%), Positives = 459/609 (75%), Gaps = 31/609 (5%)

Query: 55  NVEDDPMDEDT-VEDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRL 113
           +V DDP+DED   ED +VREIDVFF+PS+D  T+LYV QYPLRPSWRPY+ +E+C+EVRL
Sbjct: 94  SVRDDPIDEDIPEEDTVVREIDVFFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRL 153

Query: 114 KPISSRVEIDLSIDLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDKLHLH 173
           K  +S VEIDLSIDLDS +ID++FA KY+ITKQTL T W+P+ ANGC VGLL GDKLHLH
Sbjct: 154 KTKTSEVEIDLSIDLDSDHIDKEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLH 213

Query: 174 PISAIVQLRPSLKHLNPGGSERTNIIST----TVKIEGPSXXXXXXXXXXXXXXMEPPTE 229
           P+ A+VQLRP+L+HLN GGS+R N  ST    TVKIEG +                   E
Sbjct: 214 PVHAVVQLRPTLQHLNSGGSKRKNAASTGANATVKIEGSN-------------------E 254

Query: 230 QKS---DEVECWVPLKYHDCKSDISSRYLQQMVAQESTPMNFTVSPYDYVTTLCPALSSN 286
           +KS    + +CWVPLKYH CKSDISSRYLQQMV QES+P+NFT+  YDYVT LCP  SSN
Sbjct: 255 EKSVATSKKQCWVPLKYHSCKSDISSRYLQQMVTQESSPINFTMRAYDYVTALCPGGSSN 314

Query: 287 SLPKGPSKRYLLSLPLTVEERLHKMFIEGPPLRRFNAIKHFAPEYSDKELLEYLQKHAVL 346
           +LPKG SKRYLLSLP  VEERL KM +E  PL RF+AIKHFAPEYS+ ELL +LQ+HA+L
Sbjct: 315 NLPKGLSKRYLLSLP--VEERLKKM-LEDRPLHRFSAIKHFAPEYSENELLGFLQQHAIL 371

Query: 347 LWGLWTPKSGFLISKPGFEQLARDYVLILFSKNLNVRSSDVIVNFQGELGNSVRNFLRKF 406
           +WGLWT KS  L    G E LARDY L+LFSK+L V+ SDV +   GEL N VRN L+ F
Sbjct: 372 VWGLWTAKSSLLYPDGGVETLARDYSLLLFSKSLKVQFSDVSIR-GGELVNRVRNCLKIF 430

Query: 407 GLERCDINKTMSQPMTYWKLRELPDESFKKLHPDVVKIQEDKFTALDHNVTNSISKFVKP 466
           G+ER D++K+  +P  YWK RELPDESFKKL+PD+V+ QE+ F  L+  ++   S   K 
Sbjct: 431 GVERNDLDKSTGKPNPYWKFRELPDESFKKLYPDIVEKQEELFKGLEKQLSGFSSNVGKR 490

Query: 467 KRGQSAMTNHSVKSELVKSANSDPRVTSLGGVPPGKMTMSNETRHALPIALKKLFQTHQV 526
           K G++A+ N  V +E+ KS +SD RVTSLG VPP KMTMSNETRHALPIALKKLFQTH+V
Sbjct: 491 KIGKNAVANQGVNTEVHKSESSDQRVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKV 550

Query: 527 CSFQFIREELRKMAVSKTTLSKGDSKIAVDAAHSLDGPEHELKAVISDVACDIHGYYVLK 586
           CSF+ I E LR+MAVSK  LSKGDSK+AVDAAHSLDGP +EL AVIS+VAC+I+G YVLK
Sbjct: 551 CSFKLICEGLREMAVSKAMLSKGDSKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLK 610

Query: 587 SSQDDPFRDVVIDLLRGSGPNXXXXXXXXXXXXXXXXXXXVPNNEFTKVMKELCVSKGSV 646
           SS DDPFRDVVID+L GSGPN                   V +NE+TKVM ELCVSKGSV
Sbjct: 611 SSPDDPFRDVVIDMLCGSGPNAKLKKAEILEAARRKLGREVASNEYTKVMSELCVSKGSV 670

Query: 647 WVLKSGDGS 655
           WVLKSGDGS
Sbjct: 671 WVLKSGDGS 679