Miyakogusa Predicted Gene

Lj5g3v1957010.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1957010.2 tr|B9MUH7|B9MUH7_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_917210
PE=4,76.37,0,ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE
PROTEIN-RELATED,RFT1; Rft-1,RFT1,CUFF.56271.2
         (519 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g36470.1                                                       686   0.0  
Glyma12g00880.1                                                       566   e-161

>Glyma09g36470.1 
          Length = 413

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/442 (79%), Positives = 378/442 (85%), Gaps = 36/442 (8%)

Query: 78  DGTSMEEDVVKLMKVVWMSLPLGIFITIVACLLVFWWQDISYSTPHGQAILINGCACILE 137
           DG+SM  DVVKLMKVVWMS PLGIFITIV CL VFWWQ ISYS+PHGQAILING ACILE
Sbjct: 8   DGSSMG-DVVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYSSPHGQAILINGFACILE 66

Query: 138 LLAEPLYILSQNLVLLELRLMVETLATLSRCLTMYFLIVKQTGMEKSIIFALSQSAYGAC 197
           LLAEP+YILSQNLVLLELRLMVET+ATLSRCLTMYFLIVKQTGMEKSIIFALSQSAYGAC
Sbjct: 67  LLAEPVYILSQNLVLLELRLMVETVATLSRCLTMYFLIVKQTGMEKSIIFALSQSAYGAC 126

Query: 198 LFLGYWGYMVLLRKFRYSYLFPFRERKVIGFDRQLSKMCMLFTFQSYRKLILQEGEKMVL 257
           LFLGYWGY++L +KFR SYLFPFRE K+I FD+QLSKMC+LFTFQS+RKLILQEGEK+VL
Sbjct: 127 LFLGYWGYLLLSQKFRVSYLFPFREGKMIDFDQQLSKMCILFTFQSFRKLILQEGEKIVL 186

Query: 258 VWLDTPYNQAVYGLVDKLGSLVVRLLFLPFEESSYTTFARFASGQYPGKSKKLGNCLTES 317
           VWLDTPYNQA +   D+  SLVVRL+FLPFEESSY TFAR ASGQYPGKSKKLGN LTES
Sbjct: 187 VWLDTPYNQAKH---DEC-SLVVRLVFLPFEESSYVTFARSASGQYPGKSKKLGNSLTES 242

Query: 318 LKLVLLIGLVFIAFGPSYSYSLIRLLYGQKWSDGEAATALRYYCFYVIVLAMNGTSEAFM 377
           LKLVLLIGLVF+AFGPSYSYSLIRLLYG+KWSDGEA+TALR YCFYVIVLAMNGTSEAFM
Sbjct: 243 LKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVIVLAMNGTSEAFM 302

Query: 378 HAVATESQLKRSNDSLLVFSLIYIALNVLLIKLSGAVGLIIANSLNMTLRILYSAIFIKN 437
           HAVATE QLKRSNDSLL+FSLIYI LNV+LI+L+GAVGLI+ANSL               
Sbjct: 303 HAVATERQLKRSNDSLLIFSLIYIVLNVMLIRLAGAVGLILANSLR-------------- 348

Query: 438 YFKGSSSFSFCDCLPSGWIILLLSGVITLISENVFLDQDNFWPSFMIHFSVGLACFCVSA 497
                            WI LLLSGVITL+SENV LD+DNF  SFM H SVGLACFCVS+
Sbjct: 349 -----------------WITLLLSGVITLVSENVLLDRDNFSLSFMFHLSVGLACFCVSS 391

Query: 498 YVIYCREKPFIKRITRFRDHSD 519
           YVIYCREKPFI+RI RF DH D
Sbjct: 392 YVIYCREKPFIRRIIRFNDHVD 413


>Glyma12g00880.1 
          Length = 383

 Score =  566 bits (1458), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/346 (84%), Positives = 311/346 (89%), Gaps = 10/346 (2%)

Query: 78  DGTSMEEDVVKLMKVVWMSLPLGIFITIVACLLVFWWQDISYSTPHGQAILINGCACILE 137
           DGTSM  DVVKLMKVVWMS PLGIFIT+V CL VFWWQ ISYS+PHGQAILING ACILE
Sbjct: 8   DGTSMG-DVVKLMKVVWMSFPLGIFITVVVCLFVFWWQQISYSSPHGQAILINGFACILE 66

Query: 138 LLAEPLYILSQNLVLLELRLMVETLATLSRCLTMYFLIVKQTGMEKSIIFALSQSAYGAC 197
           LLAEP+YILSQNLVLLELRLMVET+ATLS CLTMYFLIVKQTG+EKSIIFALSQSAYGAC
Sbjct: 67  LLAEPVYILSQNLVLLELRLMVETVATLSWCLTMYFLIVKQTGIEKSIIFALSQSAYGAC 126

Query: 198 LFLGYWGYMVLLRKFRYSYLFPFRERKVIGFDRQLSKMCMLFTFQSYRKLILQEGEKMVL 257
           LFLGYWGY++L +KFR SYLFPFRE KVI FDRQLSKMCMLFTFQS+RKLILQEGEK+VL
Sbjct: 127 LFLGYWGYLLLSQKFRVSYLFPFREGKVIDFDRQLSKMCMLFTFQSFRKLILQEGEKIVL 186

Query: 258 VWLDTPYNQAVYGLVDKLGSLVVRLLFLPFEESSYTTFARFASGQYPGKSKKLGNCLTES 317
                 Y      LV   GSLVVRL+FLPFEESSY TFAR  SGQYPGKSKKLGN +TES
Sbjct: 187 ------YMALWTSLV---GSLVVRLVFLPFEESSYATFARSTSGQYPGKSKKLGNGVTES 237

Query: 318 LKLVLLIGLVFIAFGPSYSYSLIRLLYGQKWSDGEAATALRYYCFYVIVLAMNGTSEAFM 377
           LKLVLLIGLVF+AFGPSYSYSLIRLLYG+KWSDGEA+TALR YCFYVIVLAMNGTSEAFM
Sbjct: 238 LKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVIVLAMNGTSEAFM 297

Query: 378 HAVATESQLKRSNDSLLVFSLIYIALNVLLIKLSGAVGLIIANSLN 423
           HAVATESQLKRSNDSLLVFSLIYI LNVLLI+ +GAVGLI+ANSL 
Sbjct: 298 HAVATESQLKRSNDSLLVFSLIYIVLNVLLIRSAGAVGLIMANSLR 343