Miyakogusa Predicted Gene

Lj5g3v1889480.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1889480.2 tr|F6HJC9|F6HJC9_VITVI tRNA pseudouridine
synthase A OS=Vitis vinifera GN=truA PE=3 SV=1,67.51,0,Pseudouridine
synthase,Pseudouridine synthase, catalytic domain; TruA,Pseudouridine
synthase I, TruA,CUFF.56115.2
         (427 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g36410.1                                                       546   e-155
Glyma20g31160.1                                                       276   3e-74
Glyma20g31160.2                                                       228   1e-59
Glyma13g17960.1                                                        89   1e-17
Glyma17g04570.1                                                        77   3e-14
Glyma0448s00210.1                                                      59   8e-09
Glyma02g39970.1                                                        57   5e-08

>Glyma10g36410.1 
          Length = 336

 Score =  546 bits (1406), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/337 (78%), Positives = 284/337 (84%), Gaps = 19/337 (5%)

Query: 89  MYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVI 148
           MYFGKRFYGFASEAQMEPTVESE+FKA  K RLLVG+KKESQYSRCGRTDKGVSSVGQVI
Sbjct: 1   MYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGNKKESQYSRCGRTDKGVSSVGQVI 60

Query: 149 ALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARF 208
           AL+LRSNLKIS  N G+SG +++EQHEGEIDYVRVLNRVLPNDIRI+GWCPAPVDFHARF
Sbjct: 61  ALFLRSNLKISETNNGNSGVVLDEQHEGEIDYVRVLNRVLPNDIRIMGWCPAPVDFHARF 120

Query: 209 SCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPT 268
           SCLSREYKYFFWKE LNI AMESAG KL+GEHDFRNFCKMDA NVHNYRR I +FEI PT
Sbjct: 121 SCLSREYKYFFWKENLNIQAMESAGNKLVGEHDFRNFCKMDAANVHNYRRRIKLFEISPT 180

Query: 269 DV---------RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTN 319
           DV         RY  NQLWVIKIRGSAFLWHQVRCMV VLF+VGKGLESPNVIDMLLDT 
Sbjct: 181 DVSQHFFPFTCRYNDNQLWVIKIRGSAFLWHQVRCMVVVLFMVGKGLESPNVIDMLLDTA 240

Query: 320 KTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEAL 379
           +  RKPQY M+SEVPLVLQSCEF++IKFMCSS+AGEAL +HLVNECQ +QLQAA+FHEAL
Sbjct: 241 RILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVHLVNECQIYQLQAAIFHEAL 300

Query: 380 LNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSY 416
           LNCVPL        S G     AS +   SR  E S+
Sbjct: 301 LNCVPL--------SNGVA--NASKLAAFSRIQEESF 327


>Glyma20g31160.1 
          Length = 185

 Score =  276 bits (706), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 143/154 (92%), Gaps = 1/154 (0%)

Query: 272 YGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSS 331
           Y  NQLWVIKIRGSAFLWHQVRCMVAVLF+VGKGLESPNVIDMLLDT++  RKPQY M+S
Sbjct: 31  YNDNQLWVIKIRGSAFLWHQVRCMVAVLFMVGKGLESPNVIDMLLDTSRILRKPQYTMAS 90

Query: 332 EVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSL 391
           EVPLVLQSCEF++IKFMCSSDAGEALR+HLVNECQ +QLQAA+FHEALLNCVPL +DQSL
Sbjct: 91  EVPLVLQSCEFDNIKFMCSSDAGEALRVHLVNECQIYQLQAAIFHEALLNCVPLSNDQSL 150

Query: 392 PPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNS 425
            P +G +KKK S+VPLMSRPTEPSYEERRAKLN+
Sbjct: 151 LPFQG-SKKKVSHVPLMSRPTEPSYEERRAKLNT 183


>Glyma20g31160.2 
          Length = 132

 Score =  228 bits (580), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/131 (82%), Positives = 122/131 (93%), Gaps = 1/131 (0%)

Query: 295 MVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAG 354
           MVAVLF+VGKGLESPNVIDMLLDT++  RKPQY M+SEVPLVLQSCEF++IKFMCSSDAG
Sbjct: 1   MVAVLFMVGKGLESPNVIDMLLDTSRILRKPQYTMASEVPLVLQSCEFDNIKFMCSSDAG 60

Query: 355 EALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEP 414
           EALR+HLVNECQ +QLQAA+FHEALLNCVPL +DQSL P +G +KKK S+VPLMSRPTEP
Sbjct: 61  EALRVHLVNECQIYQLQAAIFHEALLNCVPLSNDQSLLPFQG-SKKKVSHVPLMSRPTEP 119

Query: 415 SYEERRAKLNS 425
           SYEERRAKLN+
Sbjct: 120 SYEERRAKLNT 130


>Glyma13g17960.1 
          Length = 289

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 110/245 (44%), Gaps = 42/245 (17%)

Query: 88  VMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQV 147
           + Y G ++ G+  + +  PTV+  + KAL +   L   +K+       RTD GV + GQV
Sbjct: 12  LAYDGTQYAGWQYQ-ESPPTVQCTVEKALTQATKL--QRKDLCLVGASRTDAGVHAWGQV 68

Query: 148 IALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHAR 207
              +   N            + +E+ H         LN +LP DIRI    PA  +FHAR
Sbjct: 69  AHFFTPFNY-----------DNLEQLHAA-------LNGLLPTDIRIREISPASAEFHAR 110

Query: 208 FSCLSREYKYFFWKEG----------------LNIPAMESAGIKLIGEHDFRNFCKMDAT 251
           FS  S+ Y Y  + +                 LN   M  A    +G+HDF  F    A 
Sbjct: 111 FSAKSKIYHYKIYNDAIMDPFQRHFAYHSVYKLNSAVMREAATYFVGKHDFSAF----AN 166

Query: 252 NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNV 311
             HN R    +  +F  D++  G  L  +++ GS FL+ QVR MVA+L  +G+    P++
Sbjct: 167 ASHNDRVPDPVKHVFRFDLKEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPDI 225

Query: 312 IDMLL 316
           +  +L
Sbjct: 226 VPHIL 230


>Glyma17g04570.1 
          Length = 281

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 44/231 (19%)

Query: 86  LKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVG 145
           L + Y G ++ G+  + Q  PTV+  + KAL +   L   +K+       RTD GV + G
Sbjct: 75  LVLAYDGTKYAGWQYQ-QSPPTVQCTLEKALTRATKL--QRKDFCLVGASRTDAGVHAWG 131

Query: 146 QVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFH 205
           QV   +   N            + +EE H         LN +LP DIR+    PA  +FH
Sbjct: 132 QVAHFFTPFNY-----------DNLEELHAA-------LNGLLPTDIRVREISPASAEFH 173

Query: 206 ARFSCLSREYKYFFWKEG----------------LNIPAMESAGIKLIGEHDFRNFCKMD 249
           ARFS +S+ Y Y  + +                 LN   M  A    +G+HDF  F    
Sbjct: 174 ARFSAISKIYHYKIYNDAIMDPFQRHFAYHSVYKLNSAVMREAAKYFVGKHDFSAFANAS 233

Query: 250 ATN-VHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVL 299
             + V +  +H+  F     D++  G  L  I++ GS FL+ QVR MV  L
Sbjct: 234 NNDGVPDPVKHVFRF-----DLKEMG-ALLQIEVEGSGFLYRQVRNMVNSL 278


>Glyma0448s00210.1 
          Length = 499

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 37/188 (19%)

Query: 81  KRYVALKVMYFGKRFYGFASE------AQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
           K+ V ++V Y G  F G   +      + +E  +E+ IF A        GD  + ++ R 
Sbjct: 73  KKKVVMRVGYVGTNFRGLQMQRDEHRLSTIEKELETAIFMAGGMRDSNFGDLNKVKWGRS 132

Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRV---LPND 191
            RTDKGV S+  +IA  +               EI E   +G+   + + NR+   LPN 
Sbjct: 133 SRTDKGVHSLATIIAFKM---------------EIPENAWKGDDYGIALANRINSYLPNT 177

Query: 192 IRILGWCPAPVDFHARFSCLSREYKYF-----------FWKEGLNIPAMESAGIKLI--G 238
           IRI    P+   F  R  C  R+Y Y            F ++ ++   +E   I  +  G
Sbjct: 178 IRIFSILPSTKRFDPRRECNLRKYSYLLPADIIGIQSHFSQDEIDFHILEFNSILNVFEG 237

Query: 239 EHDFRNFC 246
           EH F N+ 
Sbjct: 238 EHPFHNYT 245


>Glyma02g39970.1 
          Length = 494

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 39/189 (20%)

Query: 81  KRYVALKVMYFGKRFYGFASE------AQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
           K+ V ++V Y G  F G   +      + +E  +E+ IF A        GD  + ++ R 
Sbjct: 74  KKKVVMRVGYVGTDFRGLQMQRDEHRLSTVEKELETAIFTAGGMRDSNFGDLNKVKWGRS 133

Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVL----NRVLPN 190
            RTDKGV S+  +IA  +               EI E   +G+ DY  VL    N  LPN
Sbjct: 134 SRTDKGVHSLATMIAFKM---------------EIPENAWKGD-DYGIVLANRINSYLPN 177

Query: 191 DIRILGWCPAPVDFHARFSCLSREYKYF-----------FWKEGLNIPAMESAGIKLI-- 237
            IR+    P+   F  R  C  R+Y Y            F ++ ++    E   I  +  
Sbjct: 178 TIRVFSILPSTKRFDPRRECNLRKYSYLLPAGIIGIQSHFSQDEIDFHISEFNSILNVFE 237

Query: 238 GEHDFRNFC 246
           GEH F N+ 
Sbjct: 238 GEHPFHNYT 246