Miyakogusa Predicted Gene

Lj5g3v1869800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1869800.1 tr|A9S8A5|A9S8A5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_125705,39.84,6e-18,seg,NULL;
Thioredoxin-like,Thioredoxin-like fold;
Thioredoxin_6,NULL,CUFF.56092.1
         (239 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g36170.1                                                       365   e-101

>Glyma10g36170.1 
          Length = 433

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/238 (78%), Positives = 209/238 (87%), Gaps = 2/238 (0%)

Query: 1   MVLYDFDKIPALVSLNPQFNERSTFYGPYEENFLEDFVKQNLIPLVVPVSYDTLKLMKAD 60
           MVL+DFDKIPALVSLNPQ+NER+TFYGP+EE+FLEDFV+QNLIPL VPVSY+TLKLMKAD
Sbjct: 198 MVLHDFDKIPALVSLNPQYNERNTFYGPFEEDFLEDFVRQNLIPLAVPVSYETLKLMKAD 257

Query: 61  GRKIVLTIVEDENEENSKELIKLLKGAASANRDLIFGYVGVKQMDEFADKFDTSTKLPKM 120
           GRKIVLTIVEDE+EE ++ELIKLLK AASANRDLIFGYVGVKQM+EFA+ FD  TKLPKM
Sbjct: 258 GRKIVLTIVEDEDEETTRELIKLLKAAASANRDLIFGYVGVKQMEEFAENFDIDTKLPKM 317

Query: 121 VIWDKSDDYLSVVGSESIEGEDQGTQITKFLEGYREGRTVQKRLSGPSLMQFIHRSFDIR 180
           VIWDKSDDYLSVV SE+IEGEDQGTQITKFLEGYREGRT++K  SGPSLM+FIHRSFDIR
Sbjct: 318 VIWDKSDDYLSVVDSETIEGEDQGTQITKFLEGYREGRTIKKTFSGPSLMRFIHRSFDIR 377

Query: 181 MVYMIVFMVAVFILIQTLGGKGGDEHHRVPNQEQVDHAXXXXXXXXXXXXYKPGDKKE 238
           MVY+IVF+VAV +LIQT   KGGDE+  VPNQ Q DHA            YKPGDK++
Sbjct: 378 MVYIIVFVVAVLMLIQTF-SKGGDEYQSVPNQVQTDHA-ISSVSEAENNEYKPGDKED 433