Miyakogusa Predicted Gene

Lj5g3v1723820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1723820.1 tr|B6K694|B6K694_SCHJY U4/U6 X U5 tri-snRNP
complex subunit Dim1 OS=Schizosaccharomyces japonicus
(s,38.97,2e-19,Thioredoxin-like,Thioredoxin-like fold; DIM1,mRNA
splicing factor, thioredoxin-like U5 snRNP; THIORE,CUFF.56258.1
         (151 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g33110.1                                                       264   2e-71
Glyma19g28850.1                                                        97   5e-21
Glyma09g42010.1                                                        97   5e-21
Glyma11g10560.1                                                        69   2e-12

>Glyma20g33110.1 
          Length = 151

 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/151 (83%), Positives = 139/151 (92%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+ MLTT +KKKEVD+IIRDT DKV+VLRFGRASD VCLQ D I SKAARDVSKFATVAL
Sbjct: 1   MSDMLTTFTKKKEVDTIIRDTFDKVVVLRFGRASDLVCLQQDHILSKAARDVSKFATVAL 60

Query: 61  VDVDSPDIQVYVKYFDITLIPSTMFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVVEA 120
           VDVDS +IQVY+KYFDITLIPST+FFFNAHHMKMD GTADHTKW+GAF+ KQDF+DVVEA
Sbjct: 61  VDVDSEEIQVYLKYFDITLIPSTVFFFNAHHMKMDYGTADHTKWIGAFYAKQDFVDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYQGV 151
           IFRGAMKGKLIVNCPLPPE IPK+Q+LY+ V
Sbjct: 121 IFRGAMKGKLIVNCPLPPESIPKFQILYKDV 151


>Glyma19g28850.1 
          Length = 142

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++ +  A  +  FA + L
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVV 118
           VD+ + PD     + +D    PST MFFF   H+ +D GT ++ K   A   KQ+FID+V
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116

Query: 119 EAIFRGAMKGKLIVNCP 135
           E ++RGA KG+ +V  P
Sbjct: 117 ETVYRGARKGRGLVIAP 133


>Glyma09g42010.1 
          Length = 142

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++ +  A  +  FA + L
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVV 118
           VD+ + PD     + +D    PST MFFF   H+ +D GT ++ K   A   KQ+FID+V
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116

Query: 119 EAIFRGAMKGKLIVNCP 135
           E ++RGA KG+ +V  P
Sbjct: 117 ETVYRGARKGRGLVIAP 133


>Glyma11g10560.1 
          Length = 117

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 40  QLDQIFSKAARDVSKFATVALVDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSG 97
           ++D++ +  A  +  FA + LVD+ + PD     + ++    P T MFFF   H+ +D G
Sbjct: 15  KMDEVLASVAEKIKNFAVIYLVDITEVPDFNTMYELYE----PCTVMFFFRNKHIMIDLG 70

Query: 98  TADHTKWVGAFHKKQDFIDVVEAIFRGAMKGKLIVNCP 135
           T ++ K   A   KQ+FID+VE ++RGA KG+ +V  P
Sbjct: 71  TGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISP 108