Miyakogusa Predicted Gene
- Lj5g3v1533400.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1533400.3 tr|I3SAA1|I3SAA1_LOTJA Flap endonuclease 1
OS=Lotus japonicus GN=FEN1 PE=2 SV=1,99.66,0,XPGRADSUPER,DNA repair
protein (XPGC)/yeast Rad; no description,NULL; coiled-coil,NULL;
XPG_2,XPG co,CUFF.55447.3
(290 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma20g22190.3 496 e-141
Glyma20g22190.2 496 e-141
Glyma10g28200.2 493 e-139
Glyma10g28200.1 493 e-139
Glyma20g22190.1 478 e-135
Glyma01g16370.1 76 5e-14
Glyma09g39990.1 69 7e-12
Glyma08g12770.1 68 1e-11
Glyma05g29660.1 68 1e-11
Glyma07g11320.1 65 6e-11
Glyma18g46230.1 64 2e-10
Glyma06g32810.1 53 3e-07
Glyma16g31860.1 52 7e-07
>Glyma20g22190.3
Length = 382
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/278 (85%), Positives = 254/278 (91%)
Query: 1 MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
+KKQELAKR SKRAEATEDLSEAL+ NKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93 LKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152
Query: 61 VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
VVEAPSEAEAQCAALCKAG VYAVASEDMDSLTFG+PKFLRHLMDPSSKK+PVMEFEVAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAK 212
Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
ILEELN+TMDQFIDLCILSGCDYCD+IRGIGG TALKLIRQHGSIENILEN+NKERYQIP
Sbjct: 213 ILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIP 272
Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
++WPYQEARRLFKEPMV T + EL++KWS+PDEEGLITFLVNENGFNSDRVT
Sbjct: 273 DNWPYQEARRLFKEPMVITDEKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKV 332
Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKETPDNNAKETN 278
SSQGRLESFFKP + SVPIKRKETP NNAKETN
Sbjct: 333 AKNKSSQGRLESFFKPTVNPSVPIKRKETPVNNAKETN 370
>Glyma20g22190.2
Length = 382
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/278 (85%), Positives = 254/278 (91%)
Query: 1 MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
+KKQELAKR SKRAEATEDLSEAL+ NKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93 LKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152
Query: 61 VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
VVEAPSEAEAQCAALCKAG VYAVASEDMDSLTFG+PKFLRHLMDPSSKK+PVMEFEVAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAK 212
Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
ILEELN+TMDQFIDLCILSGCDYCD+IRGIGG TALKLIRQHGSIENILEN+NKERYQIP
Sbjct: 213 ILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIP 272
Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
++WPYQEARRLFKEPMV T + EL++KWS+PDEEGLITFLVNENGFNSDRVT
Sbjct: 273 DNWPYQEARRLFKEPMVITDEKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKV 332
Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKETPDNNAKETN 278
SSQGRLESFFKP + SVPIKRKETP NNAKETN
Sbjct: 333 AKNKSSQGRLESFFKPTVNPSVPIKRKETPVNNAKETN 370
>Glyma10g28200.2
Length = 382
Score = 493 bits (1269), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/278 (84%), Positives = 252/278 (90%)
Query: 1 MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
+KKQELAKR SKRAEATEDLSEAL+ NKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93 LKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152
Query: 61 VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
VVEAPSEAEAQCAALCKAG VY VASEDMDSLTFGAPKFLRHLMDPSSKK+PVMEFEVAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYGVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAK 212
Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
ILEELN+TMDQFIDLCILSGCDYCD+IRGIGG TALKLIRQHGSIENILEN+NKERYQIP
Sbjct: 213 ILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIP 272
Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
++WPYQEARRLFKEP+V T + EL++KWS+PDEEGLITFLVNENGFN DRVT
Sbjct: 273 DNWPYQEARRLFKEPLVITDEKELDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKV 332
Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKETPDNNAKETN 278
SSQGRLESFFKP + SVPIKRKETP NNAKETN
Sbjct: 333 AKNKSSQGRLESFFKPTANPSVPIKRKETPVNNAKETN 370
>Glyma10g28200.1
Length = 382
Score = 493 bits (1269), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/278 (84%), Positives = 252/278 (90%)
Query: 1 MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
+KKQELAKR SKRAEATEDLSEAL+ NKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93 LKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152
Query: 61 VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
VVEAPSEAEAQCAALCKAG VY VASEDMDSLTFGAPKFLRHLMDPSSKK+PVMEFEVAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYGVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAK 212
Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
ILEELN+TMDQFIDLCILSGCDYCD+IRGIGG TALKLIRQHGSIENILEN+NKERYQIP
Sbjct: 213 ILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIP 272
Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
++WPYQEARRLFKEP+V T + EL++KWS+PDEEGLITFLVNENGFN DRVT
Sbjct: 273 DNWPYQEARRLFKEPLVITDEKELDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKV 332
Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKETPDNNAKETN 278
SSQGRLESFFKP + SVPIKRKETP NNAKETN
Sbjct: 333 AKNKSSQGRLESFFKPTANPSVPIKRKETPVNNAKETN 370
>Glyma20g22190.1
Length = 408
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/268 (85%), Positives = 245/268 (91%)
Query: 1 MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
+KKQELAKR SKRAEATEDLSEAL+ NKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93 LKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152
Query: 61 VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
VVEAPSEAEAQCAALCKAG VYAVASEDMDSLTFG+PKFLRHLMDPSSKK+PVMEFEVAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAK 212
Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
ILEELN+TMDQFIDLCILSGCDYCD+IRGIGG TALKLIRQHGSIENILEN+NKERYQIP
Sbjct: 213 ILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIP 272
Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
++WPYQEARRLFKEPMV T + EL++KWS+PDEEGLITFLVNENGFNSDRVT
Sbjct: 273 DNWPYQEARRLFKEPMVITDEKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKV 332
Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKE 268
SSQGRLESFFKP + SVPIKRKE
Sbjct: 333 AKNKSSQGRLESFFKPTVNPSVPIKRKE 360
>Glyma01g16370.1
Length = 1296
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 49 DCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSS 108
+C++LL++ G+P + AP EAEAQCA L +V V ++D D L FGA +++ D
Sbjct: 842 ECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFD--- 898
Query: 109 KKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLI 159
+ V + + I +EL LT ++ I + +L G DY + + GIG A++++
Sbjct: 899 DRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVV 949
>Glyma09g39990.1
Length = 603
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 33 EKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSL 92
E S ++ H ++C +L+ L+G+PV++A EAEA CA L G V A + D D+
Sbjct: 107 EGVSAERNRLFSSHVQECAELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAF 166
Query: 93 TFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRGIG 151
FGA ++ P+SK+ P + ++ I L L I + +L G D+ + +RGIG
Sbjct: 167 LFGAKCIIKCFC-PNSKE-PFECYNMSDIEAGLGLKRKHLIAISLLVGDDHDINGVRGIG 224
Query: 152 GQTALKLIRQHG--SIENILENINK-ERYQIP 180
TAL ++ I N L I K QIP
Sbjct: 225 LDTALHFVKAFSEDDILNRLHEIGKGNTSQIP 256
>Glyma08g12770.1
Length = 611
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 18/197 (9%)
Query: 11 SKRAEATED-LSEALKAD---NKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPS 66
+KRA A +D L+ A++ + N + ++ V ++ Q + ++L+ + + AP
Sbjct: 90 NKRARARKDNLARAVEHESDGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPY 149
Query: 67 EAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELN 126
EA+AQ L +G V AV +ED D + FG P+ + MD + V +F+ + + +
Sbjct: 150 EADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFK-MDKFGQGV---QFQYSMLQKNKE 205
Query: 127 LTMDQF-----IDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIPE 181
L+ + F +++CILSGCDY ++ G+G + A I++ S + +L+++ +P
Sbjct: 206 LSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP- 264
Query: 182 DWPYQEARRLFKEPMVT 198
P+ E FK+ + T
Sbjct: 265 --PFYEES--FKKAIFT 277
>Glyma05g29660.1
Length = 503
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 104/197 (52%), Gaps = 18/197 (9%)
Query: 11 SKRAEATED-LSEALKAD---NKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPS 66
+KRA A +D L+ A++ + N + ++ V ++ Q + ++L+ + + AP
Sbjct: 90 NKRARARKDNLARAVEHESDGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPY 149
Query: 67 EAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELN 126
EA+AQ L +G V AV +ED D + FG P+ + MD + V +F+ + + +
Sbjct: 150 EADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFK-MDKFGQGV---QFQDSMLQKNKE 205
Query: 127 LTMDQF-----IDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIPE 181
L+ + F +++CILSGCDY ++ G+G + A I++ S + +L+++ +P
Sbjct: 206 LSFEGFNRQMLLEMCILSGCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP- 264
Query: 182 DWPYQEARRLFKEPMVT 198
P+ E FK+ ++T
Sbjct: 265 --PFYEES--FKKAILT 277
>Glyma07g11320.1
Length = 564
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 14/197 (7%)
Query: 13 RAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQC 72
+A E+ + LK N + +R V +T + L+ + V AP EA+AQ
Sbjct: 88 KAATEEERNRHLKEGNVGAASELFQRAVSITPVMAHKLIQTLKSEKIEFVVAPYEADAQL 147
Query: 73 AALCKAGM----VYAVASEDMDSLTFGAPKFL----RHLMDPSSKKVPVMEFEVAK-ILE 123
A + + G+ V AV +ED D + +G P + RH + V E +
Sbjct: 148 AYMSQLGVENGGVAAVITEDSDLIAYGCPAIIFKMDRHGNGERIELEKVFSAESGRPSFR 207
Query: 124 ELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERY-QIPED 182
N+ + +C+L+GCD+ ++ GIG A L+ ++ +++ IL + E+ Q+PED
Sbjct: 208 SFNMKL--LTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKIEKGDQMPED 265
Query: 183 WP--YQEARRLFKEPMV 197
+ +QEA +F+ +
Sbjct: 266 YAKSFQEAVAVFEHAQI 282
>Glyma18g46230.1
Length = 606
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 46 HNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMD 105
H + C +L+ L+G+PV++A EAE+ CA L G V A + D D+ FGA ++
Sbjct: 120 HVQKCVELVELLGMPVLKAKGEAESLCAQLNSEGHVDACITADSDAFLFGANCIIKCFC- 178
Query: 106 PSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRGIGGQTALKLIRQHG- 163
P+ K+ P + ++ I L L I + +L G D+ +RGIG TAL+ ++
Sbjct: 179 PNFKE-PFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDIKGVRGIGLDTALRFVKAFSE 237
Query: 164 -SIENILENINK-ERYQIP 180
I N L I K QIP
Sbjct: 238 EDILNRLHEIGKGNTSQIP 256
>Glyma06g32810.1
Length = 230
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 62 VEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKI 121
+ AP EA+AQ L + V A+ ED D + FG P+ + MD + V +F+ + +
Sbjct: 19 IVAPYEADAQMTFLAISEQVDAIIIEDSDLIPFGCPRIIFR-MDKFGQGV---QFQYSML 74
Query: 122 LEELNLTMDQF-----IDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKER 176
L+ + F + +CILSGCDY ++ G+G L R H SI+ I R
Sbjct: 75 QMNKELSFEGFNRQMLLQMCILSGCDYLQSLPGMG------LKRAHASIKRIRSYDKHLR 128
Query: 177 Y 177
Y
Sbjct: 129 Y 129
>Glyma16g31860.1
Length = 583
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 57 MGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEF 116
+G+ + EAEAQCA L + S D D FGA R + V +
Sbjct: 134 LGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVC--Y 191
Query: 117 EVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHG 163
E+ I +L D I L +L G DY + G+G ++A ++++ G
Sbjct: 192 EMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIG 238