Miyakogusa Predicted Gene

Lj5g3v1531170.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1531170.1 Non Chatacterized Hit- tr|I1NEV8|I1NEV8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,46.39,0.00000000000003,seg,NULL; zf-U1,Zinc finger, U1-C type;
zf-CCCH,Zinc finger, CCCH-type; no description,NULL; zinc
fi,CUFF.55424.1
         (137 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g28540.1                                                       121   3e-28
Glyma20g22610.1                                                        60   7e-10

>Glyma10g28540.1 
          Length = 127

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 76/141 (53%), Gaps = 18/141 (12%)

Query: 1   MPQRKFYCDYCDKLFQDTPGDRKRHARGIQHQQAKARWYDSIKXXXXXXXXXXXXXXXXX 60
           MP +K+YCDYCDKLFQDTP DRKRH +GIQH QAKARWYDS K                 
Sbjct: 1   MPVKKYYCDYCDKLFQDTPADRKRHVQGIQHHQAKARWYDSFK--------QQQIPPIPN 52

Query: 61  XXXXXXXVNTGFCRYGDSCNYIHPNANNMQQQPAIIST----QGNVVRDSMGMGVSWXXX 116
                  VNTGFCRYGDSC Y+HP  NN  QQP I++T     G+VV      GVS+   
Sbjct: 53  RPLCFHFVNTGFCRYGDSCKYLHPVPNNNVQQPPIVTTPSPSPGSVV------GVSFGNL 106

Query: 117 XXXXXXXXXXXXXXXXFVDWG 137
                           F+DWG
Sbjct: 107 PPSLQPPPDGVYLHLPFLDWG 127


>Glyma20g22610.1 
          Length = 103

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 27/34 (79%)

Query: 10 YCDKLFQDTPGDRKRHARGIQHQQAKARWYDSIK 43
          YC+K FQDT  DRKRH  GIQ QQAKARWYDS K
Sbjct: 7  YCEKQFQDTAADRKRHVLGIQQQQAKARWYDSFK 40