Miyakogusa Predicted Gene

Lj5g3v1529860.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1529860.2 Non Chatacterized Hit- tr|G7KBS3|G7KBS3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,46.23,0.0000000000001,HMG_BOX_2,High mobility group,
superfamily; no description,High mobility group, superfamily;
coiled-,CUFF.55398.2
         (189 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g16870.1                                                        51   9e-07

>Glyma20g16870.1 
          Length = 216

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 121 KQPSVEDVKEENRTSFCGDYRVTSQPEADNSLVN-AQLGITLKMAVEVP 168
           +Q + + +KEE   S  GDY VTSQPE DNSLVN A +G+ LKM  + P
Sbjct: 161 QQSTQDTIKEEKWHSLSGDYLVTSQPETDNSLVNKAVVGLVLKMTEKAP 209