Miyakogusa Predicted Gene

Lj5g3v1452150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452150.1 tr|B9I821|B9I821_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_893686
PE=3,50.94,2e-16,seg,NULL,CUFF.55264.1
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g37470.1                                                        98   3e-21
Glyma10g29860.1                                                        55   3e-08

>Glyma20g37470.1 
          Length = 437

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 53  LRHWDLEREKDDDGTPRGVLEACMKEFDS-PLLHXXXXXXXXXKAKSHWRNXXXXXXXXX 111
           LRH +LE+EK++  +PRGVLEACMK+FDS    H         +A+SHW           
Sbjct: 1   LRHLELEKEKENIASPRGVLEACMKDFDSHDQSHESKATCSTTRARSHWSKFFKIWRKKS 60

Query: 112 XXXLTSSIPHIGVPKIPKWKSRSTREHPVRSKLYNFRSSLITF 154
              L S  P I VPKIPKWKS+S+RE+ V SKLYNFRSS +TF
Sbjct: 61  FKRLGSLPPLISVPKIPKWKSKSSRENQVLSKLYNFRSSWVTF 103


>Glyma10g29860.1 
          Length = 397

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 117 SSIPHIGVPKIPKWKSRSTREHPVRSKLYNFRSSLITF 154
            SIP + VPK+PKWKS+S+RE+   SKLYNFRSS +TF
Sbjct: 25  GSIPPLSVPKLPKWKSKSSRENQALSKLYNFRSSWVTF 62