Miyakogusa Predicted Gene

Lj5g3v1351990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1351990.1 tr|G7JTT9|G7JTT9_MEDTR Dihydroorotase OS=Medicago
truncatula GN=MTR_4g078370 PE=3 SV=1,90,0,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; DIHYDROOROTASE_2,Dihydroorotase, conserved
site; Am,CUFF.55177.1
         (221 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g44630.1                                                       419   e-117
Glyma12g12950.1                                                       415   e-116
Glyma16g08280.1                                                       124   6e-29

>Glyma06g44630.1 
          Length = 346

 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/219 (90%), Positives = 208/219 (94%)

Query: 1   MVEQDLPLLVHGEVTNPEVDVFDREKVFIETILEPLVQRLPRLKVVMEHITTMDAVKFVE 60
           M E++LPLLVHGEVTN  +D+FDREKVFIETILEPLVQRLP+LKVVMEHITT DAVKFVE
Sbjct: 126 MAEKNLPLLVHGEVTNSNIDIFDREKVFIETILEPLVQRLPQLKVVMEHITTADAVKFVE 185

Query: 61  SCKEGNVAATVTPQHLFLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTGGSTRFFL 120
           SCKEG VAATVTPQHL LNRNALFQ GLQPHNYCLPVLKREIHRQAIVSAVT GS RFFL
Sbjct: 186 SCKEGYVAATVTPQHLLLNRNALFQSGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFL 245

Query: 121 GTDSAPHDRRNKECSCGCAGIYNSLVALSIYAKVFEEAGALDKLEAFTSFNGPDFYGLPR 180
           GTDSAPHDRRNKECSCGCAGIYNS VALS+YAKVFEEAGALDKLEAFTSFNGPDFYGLPR
Sbjct: 246 GTDSAPHDRRNKECSCGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPR 305

Query: 181 NKLKIKLRKAPWRVPEYLSFPFGDIVPMCAGQTLEWEAL 219
           NKLKI+LRKAPW+VP+YLSFPFGDIVPM AG+TLEWEAL
Sbjct: 306 NKLKIRLRKAPWKVPDYLSFPFGDIVPMFAGETLEWEAL 344


>Glyma12g12950.1 
          Length = 346

 Score =  415 bits (1067), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/219 (89%), Positives = 206/219 (94%)

Query: 1   MVEQDLPLLVHGEVTNPEVDVFDREKVFIETILEPLVQRLPRLKVVMEHITTMDAVKFVE 60
           M EQ+LPLLVHGEVT+  VD+FDREKVFIETIL PL+QRLP+LKVVMEHITT DAVKFVE
Sbjct: 126 MAEQNLPLLVHGEVTDSNVDIFDREKVFIETILMPLIQRLPQLKVVMEHITTADAVKFVE 185

Query: 61  SCKEGNVAATVTPQHLFLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTGGSTRFFL 120
           SCKEG VAATVTPQHL LNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVT GS RFFL
Sbjct: 186 SCKEGYVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFL 245

Query: 121 GTDSAPHDRRNKECSCGCAGIYNSLVALSIYAKVFEEAGALDKLEAFTSFNGPDFYGLPR 180
           GTDSAPHDRR KECSCGCAGIYNS VALS+YAKVFEEAGALDKLEAFTSFNGPDFYGLPR
Sbjct: 246 GTDSAPHDRRKKECSCGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPR 305

Query: 181 NKLKIKLRKAPWRVPEYLSFPFGDIVPMCAGQTLEWEAL 219
           NK KIKLRKAPW+VP+YLSFPFGDIVPM AG+TLEWEAL
Sbjct: 306 NKSKIKLRKAPWKVPDYLSFPFGDIVPMFAGETLEWEAL 344


>Glyma16g08280.1 
          Length = 109

 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 70/97 (72%), Gaps = 11/97 (11%)

Query: 1   MVEQDLPLLVHGEVTNPEVDVFDREKVFIETILEPLVQRLPRLKVVMEHITTMDAVKFVE 60
           M E +LPL VHGEVTN  VD+FDREKVFIETILEPLVQRLP+L      I   D   +  
Sbjct: 24  MAELNLPLFVHGEVTNSSVDIFDREKVFIETILEPLVQRLPQL------IEGFDGAYYYR 77

Query: 61  SCKEGNVAATVTPQHLFLNRNALFQGGLQPHNYCLPV 97
            C     +ATVTPQHL LNRNALFQGGLQP NYCLP+
Sbjct: 78  RC-----SATVTPQHLLLNRNALFQGGLQPPNYCLPL 109