Miyakogusa Predicted Gene

Lj5g3v1314600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1314600.1 Non Chatacterized Hit- tr|C6TFN8|C6TFN8_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,88.66,0,S1,Ribosomal protein S1, RNA-binding domain; EXOSC1,Exosome
complex component CSL4; ECR1_N,Exosome c,CUFF.55140.1
         (196 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g36410.1                                                       189   2e-48
Glyma10g31070.1                                                       128   5e-30
Glyma04g12710.1                                                        92   3e-19
Glyma02g09900.1                                                        91   5e-19

>Glyma20g36410.1 
          Length = 144

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 115/169 (68%), Gaps = 29/169 (17%)

Query: 3   EDKAEMVTPGEVLGRSSDVKPGRGAYTAAHNKTVYASLTGFRRTTPPEPDSPDQRPTVEV 62
           E +  M+TPGEVLGR+SD+K     ++                        P    T  +
Sbjct: 4   EKETVMLTPGEVLGRTSDIKDVELNWSQV----------------------PWTCSTAWI 41

Query: 63  TGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDK 122
             H A       G  +  RVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDK
Sbjct: 42  CRHCA-------GIYLWLRVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDK 94

Query: 123 VEMHLSFRPGDIVKALVLSLGDARAYFLSTAKNELGVVSAESTAGATMV 171
           V+MHLSF PGDIV+ALVLSLGDARAYFLSTAKNELGVVSAES AGATM+
Sbjct: 95  VDMHLSFHPGDIVRALVLSLGDARAYFLSTAKNELGVVSAESIAGATMI 143


>Glyma10g31070.1 
          Length = 343

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 78/138 (56%), Gaps = 48/138 (34%)

Query: 3   EDKAEMVTPGEVLGRSSDVKPGRGAYTAAHNKTVYASLTGFRRTTPPEPDSPDQRPTVEV 62
           E +A MVTPGEVLGR+SDVK GRGAY A HN TVYASLTGFR T PP PDS D       
Sbjct: 4   EKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSD------- 56

Query: 63  TGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDK 122
                              VTKVMAR                       QQDVRATEIDK
Sbjct: 57  ------------------LVTKVMAR-----------------------QQDVRATEIDK 75

Query: 123 VEMHLSFRPGDIVKALVL 140
           V+MHLSF PGDIV+ALVL
Sbjct: 76  VDMHLSFHPGDIVRALVL 93


>Glyma04g12710.1 
          Length = 46

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/46 (95%), Positives = 45/46 (97%)

Query: 56  QRPTVEVTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKS 101
           QRPTVEV GHKAHGPVPQPGS+VIARVTKVMARSASADIMCVGPKS
Sbjct: 1   QRPTVEVIGHKAHGPVPQPGSIVIARVTKVMARSASADIMCVGPKS 46


>Glyma02g09900.1 
          Length = 46

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/46 (97%), Positives = 45/46 (97%)

Query: 56  QRPTVEVTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKS 101
           QR TVEVTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKS
Sbjct: 1   QRLTVEVTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKS 46