Miyakogusa Predicted Gene
- Lj5g3v1237800.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1237800.1 Non Chatacterized Hit- tr|K3Y583|K3Y583_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009371,40.52,9e-17,seg,NULL; bHLH-MYC_N,Transcription factor
MYC/MYB N-terminal,CUFF.55087.1
(135 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma12g31460.2 63 7e-11
Glyma11g18290.1 61 4e-10
Glyma12g31460.1 54 4e-08
Glyma13g38930.1 46 1e-05
>Glyma12g31460.2
Length = 590
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 18/128 (14%)
Query: 12 LRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXDIAHVLPQMHLL---- 67
L+ L+TLC WSYAVFW+ NS +LI + P M L+
Sbjct: 5 LKEALRTLCGRNQ-WSYAVFWKIGCHNSKLLIWEECYY------EPLPCPPHMMLVFFRV 57
Query: 68 --GEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKA 125
IVG AAF+G H W+ ++ T++ + Q E +H QFS GI+T+ VIPV
Sbjct: 58 SVKGSIVGRAAFTGSHQWILLNNFTKDA-YPPQVYAE----VHHQFSAGIQTVAVIPVLP 112
Query: 126 CGVVQFVS 133
GVVQ S
Sbjct: 113 HGVVQLGS 120
>Glyma11g18290.1
Length = 852
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 34/150 (22%)
Query: 12 LRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLI----------------------MXXXXX 49
L+ L+TLCS WSYA+FW+ NS +LI
Sbjct: 5 LKEALRTLCSRNR-WSYAIFWKIGCNNSKLLIWEDYYYEPLPSPFPPRDGEGCWFSSESQ 63
Query: 50 XXXXXXDIAHVLPQM------HLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTED 103
+ ++ +M + GEGIVG AAF+G + W+ ++ T++ + + E
Sbjct: 64 LIQEEDRVCVLINKMMVNNSVSIAGEGIVGRAAFTGNYQWILLNNFTRDA-YPPEVYPE- 121
Query: 104 DSGLHQQFSNGIKTIVVIPVKACGVVQFVS 133
LH QFS G++T+ VIPV GVVQ S
Sbjct: 122 ---LHYQFSAGMQTVAVIPVLPHGVVQLGS 148
>Glyma12g31460.1
Length = 672
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 66 LLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKA 125
+ GEGIVG AAF+G H W+ ++ T++ + Q E +H QFS GI+T+ VIPV
Sbjct: 9 IAGEGIVGRAAFTGSHQWILLNNFTKDA-YPPQVYAE----VHHQFSAGIQTVAVIPVLP 63
Query: 126 CGVVQFVS 133
GVVQ S
Sbjct: 64 HGVVQLGS 71
>Glyma13g38930.1
Length = 913
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 71 IVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKACGVVQ 130
I+G AAF+G H W+ ++ T++ + Q E +H QFS GI+T+ VIPV GVVQ
Sbjct: 108 IIGRAAFTGSHQWILLNNFTEDA-YPPQVYAE----VHHQFSAGIQTVAVIPVLPHGVVQ 162
Query: 131 FVS 133
S
Sbjct: 163 LGS 165