Miyakogusa Predicted Gene

Lj5g3v1237800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1237800.1 Non Chatacterized Hit- tr|K3Y583|K3Y583_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009371,40.52,9e-17,seg,NULL; bHLH-MYC_N,Transcription factor
MYC/MYB N-terminal,CUFF.55087.1
         (135 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g31460.2                                                        63   7e-11
Glyma11g18290.1                                                        61   4e-10
Glyma12g31460.1                                                        54   4e-08
Glyma13g38930.1                                                        46   1e-05

>Glyma12g31460.2 
          Length = 590

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 18/128 (14%)

Query: 12  LRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXDIAHVLPQMHLL---- 67
           L+  L+TLC     WSYAVFW+    NS +LI            +     P M L+    
Sbjct: 5   LKEALRTLCGRNQ-WSYAVFWKIGCHNSKLLIWEECYY------EPLPCPPHMMLVFFRV 57

Query: 68  --GEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKA 125
                IVG AAF+G H W+  ++ T++  +  Q   E    +H QFS GI+T+ VIPV  
Sbjct: 58  SVKGSIVGRAAFTGSHQWILLNNFTKDA-YPPQVYAE----VHHQFSAGIQTVAVIPVLP 112

Query: 126 CGVVQFVS 133
            GVVQ  S
Sbjct: 113 HGVVQLGS 120


>Glyma11g18290.1 
          Length = 852

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 34/150 (22%)

Query: 12  LRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLI----------------------MXXXXX 49
           L+  L+TLCS    WSYA+FW+    NS +LI                            
Sbjct: 5   LKEALRTLCSRNR-WSYAIFWKIGCNNSKLLIWEDYYYEPLPSPFPPRDGEGCWFSSESQ 63

Query: 50  XXXXXXDIAHVLPQM------HLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTED 103
                  +  ++ +M       + GEGIVG AAF+G + W+  ++ T++  +  +   E 
Sbjct: 64  LIQEEDRVCVLINKMMVNNSVSIAGEGIVGRAAFTGNYQWILLNNFTRDA-YPPEVYPE- 121

Query: 104 DSGLHQQFSNGIKTIVVIPVKACGVVQFVS 133
              LH QFS G++T+ VIPV   GVVQ  S
Sbjct: 122 ---LHYQFSAGMQTVAVIPVLPHGVVQLGS 148


>Glyma12g31460.1 
          Length = 672

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 66  LLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKA 125
           + GEGIVG AAF+G H W+  ++ T++  +  Q   E    +H QFS GI+T+ VIPV  
Sbjct: 9   IAGEGIVGRAAFTGSHQWILLNNFTKDA-YPPQVYAE----VHHQFSAGIQTVAVIPVLP 63

Query: 126 CGVVQFVS 133
            GVVQ  S
Sbjct: 64  HGVVQLGS 71


>Glyma13g38930.1 
          Length = 913

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 71  IVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKACGVVQ 130
           I+G AAF+G H W+  ++ T++  +  Q   E    +H QFS GI+T+ VIPV   GVVQ
Sbjct: 108 IIGRAAFTGSHQWILLNNFTEDA-YPPQVYAE----VHHQFSAGIQTVAVIPVLPHGVVQ 162

Query: 131 FVS 133
             S
Sbjct: 163 LGS 165