Miyakogusa Predicted Gene

Lj5g3v1236750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1236750.1 Non Chatacterized Hit- tr|I0YWS9|I0YWS9_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,40.14,7e-18,coiled-coil,NULL; seg,NULL; cwf18,mRNA splicing factor,
Cwf18; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.55079.1
         (160 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g35890.1                                                       182   1e-46
Glyma10g31720.1                                                       176   1e-44

>Glyma20g35890.1 
          Length = 152

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 115/160 (71%), Gaps = 12/160 (7%)

Query: 1   MGSEEESIEQTVXXXXXXXXXXXXXXXXXNAPEAGTEPE-SAAANGNDDRDESPQEEQEN 59
           MGSEE+SIEQ+V                 +A     EPE     + +++ D+ PQE    
Sbjct: 1   MGSEEDSIEQSVASRRERLLALRAAQELSSA----AEPEPKDNNDDDNEEDQEPQE---- 52

Query: 60  LSMKFRNYVPHDKHLQEGKLAPAVLPKFEDPV-AASAPEPHPQEDPFLNIAPKKPNWDLR 118
             MKFRNYVPHDK+LQEGKLAPAVLPKFEDPV A   PEP   EDPFLNIAPKKPNWDLR
Sbjct: 53  --MKFRNYVPHDKNLQEGKLAPAVLPKFEDPVDAVPPPEPEAAEDPFLNIAPKKPNWDLR 110

Query: 119 RDVQKKLDKLEKRTQKALYQLMVEQEKQKELAEGDDTNGT 158
           RDVQKKLDKLEKRTQKALYQLMVEQEKQ +L EGDDTNGT
Sbjct: 111 RDVQKKLDKLEKRTQKALYQLMVEQEKQNQLTEGDDTNGT 150


>Glyma10g31720.1 
          Length = 152

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/161 (65%), Positives = 116/161 (72%), Gaps = 10/161 (6%)

Query: 1   MGSEEESIEQTVXXXXXXXXXXXXXXXXXNAPEAGTEPESAAANGNDDRDESPQEEQENL 60
           MGSEE+SIEQ+V                 + PE   EP     NGN D D   +E+QE  
Sbjct: 1   MGSEEDSIEQSVASRRERLLALRAAQELSSVPEP--EP-----NGNKDDDN--EEDQEPQ 51

Query: 61  SMKFRNYVPHDKHLQEGKLAPAVLPKFEDPVAASAPEPH-PQEDPFLNIAPKKPNWDLRR 119
            MKFRNYVPHDK+LQEGKLAPAVLPKFEDPV    P     +EDPFLNIAPKKPNWDLRR
Sbjct: 52  EMKFRNYVPHDKNLQEGKLAPAVLPKFEDPVDDVPPPEPEAKEDPFLNIAPKKPNWDLRR 111

Query: 120 DVQKKLDKLEKRTQKALYQLMVEQEKQKELAEGDDTNGTLD 160
           DVQKKLDKLEKRTQKALYQLMVEQEKQ +L EGDDTNGT++
Sbjct: 112 DVQKKLDKLEKRTQKALYQLMVEQEKQNQLTEGDDTNGTVE 152