Miyakogusa Predicted Gene
- Lj5g3v1211580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1211580.1 Non Chatacterized Hit- tr|K4C772|K4C772_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.01,0,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX,Clp
protease, ATP-binding subunit ClpX; HSL AND ,CUFF.55059.1
(278 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g28260.1 278 5e-75
Glyma04g41400.1 251 6e-67
Glyma20g35600.1 251 7e-67
Glyma06g13450.1 249 3e-66
Glyma16g33080.1 232 3e-61
Glyma10g32040.1 114 1e-25
Glyma04g39180.1 50 2e-06
>Glyma09g28260.1
Length = 659
Score = 278 bits (711), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 137/156 (87%), Positives = 145/156 (92%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKD 182
LG+D P+PKEICKGLDKFVIGQ AKKVLSVAVYNHYKRIY+A+ Q+GS DS SE D
Sbjct: 237 LGKDFPSPKEICKGLDKFVIGQQRAKKVLSVAVYNHYKRIYHATLQKGSAADSGASEVLD 296
Query: 183 DDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY 242
DDD+VELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY
Sbjct: 297 DDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY 356
Query: 243 KLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
KLLVAA+FNV AAQQGI+YIDEVDKITKKAESLNIS
Sbjct: 357 KLLVAADFNVAAAQQGIIYIDEVDKITKKAESLNIS 392
>Glyma04g41400.1
Length = 524
Score = 251 bits (641), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 125/160 (78%), Positives = 136/160 (85%), Gaps = 4/160 (2%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQE----GSGEDSKIS 178
LG PTPKEICKGLDKFVIGQ AKKVLSVAVYNHYKRI+ +S G +++ +
Sbjct: 100 LGNSFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIFNETSSSKWPAGDSDNNNVK 159
Query: 179 EGKDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVE 238
DDD VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADAT+LTQAGYVGEDVE
Sbjct: 160 TDAVDDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVE 219
Query: 239 SILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
SILYKLL+ A++NV AAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 220 SILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNIS 259
>Glyma20g35600.1
Length = 506
Score = 251 bits (641), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 135/183 (73%), Positives = 139/183 (75%), Gaps = 27/183 (14%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQ----------EGSG 172
LGRD PTPKEICKGLDKFVIGQ+ AKKVLSVAVYNHY+RIY S
Sbjct: 57 LGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYQRIYQGSLSFFFRYHTFFIHFVI 116
Query: 173 EDSKISEGKDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQ--- 229
D +S+G DD D VELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQ
Sbjct: 117 ADEGLSQGLDDGDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAIL 176
Query: 230 --------------AGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESL 275
AGYVGEDVESILYKLL AAEFNVQAAQQGIVYIDEVDKITKKAESL
Sbjct: 177 AISDLVPWFTQGFIAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESL 236
Query: 276 NIS 278
NIS
Sbjct: 237 NIS 239
>Glyma06g13450.1
Length = 524
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 125/159 (78%), Positives = 134/159 (84%), Gaps = 3/159 (1%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASS---QEGSGEDSKISE 179
LG PTPKEICKGLDKFVIGQ AKKVLSVAVYNHYKRI+ +S D+ +
Sbjct: 101 LGNSFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIFNETSLPKWPAGDSDNSVKV 160
Query: 180 GKDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVES 239
DDD VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADAT+LTQAGYVGEDVES
Sbjct: 161 DAADDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVES 220
Query: 240 ILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
ILYKLL+ A++NV AAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 221 ILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNIS 259
>Glyma16g33080.1
Length = 689
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 137/169 (81%), Gaps = 13/169 (7%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKD 182
LG+D P+PKEICKGLDKFVIGQ AKKVLSVAVYNHYKRIY+A+ Q+GS DS +SE D
Sbjct: 254 LGKDFPSPKEICKGLDKFVIGQQRAKKVLSVAVYNHYKRIYHATLQKGSAADSGVSEVLD 313
Query: 183 DDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA------GYVGED 236
DDD+VELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFV+ DATTLTQA + G
Sbjct: 314 DDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVVTDATTLTQAIVVSNCFWFGFI 373
Query: 237 VESILYK-------LLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
V S++ + L AA+FNV AAQQGI+YIDEVDKITKK++SLNIS
Sbjct: 374 VGSLVLRQSFVVIDLNKAADFNVAAAQQGIIYIDEVDKITKKSKSLNIS 422
>Glyma10g32040.1
Length = 413
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 85/156 (54%), Gaps = 41/156 (26%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKD 182
LGRD PTPKEI KGLDKFVIGQ+ AKKVLSVAVYNHY+RIY+
Sbjct: 21 LGRDFPTPKEIFKGLDKFVIGQHMAKKVLSVAVYNHYQRIYH------------------ 62
Query: 183 DDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY 242
G +L VN +A + + V ++ L
Sbjct: 63 --------------------GFLSFFLSLFFSVNSSSTVAKDCPWSFSRRVA--IQMHLV 100
Query: 243 KLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
++ A EFNVQAAQQGI+YIDEVDKITKKAESLNIS
Sbjct: 101 QIFFA-EFNVQAAQQGIIYIDEVDKITKKAESLNIS 135
>Glyma04g39180.1
Length = 755
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 194 VLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQ 253
VLL GP G+GKTLLAK +A +PF A+ T + +VG V + K L A N +
Sbjct: 252 VLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEM-FVG--VAASRVKDLFA---NAR 305
Query: 254 AAQQGIVYIDEVDKITKK 271
A I++IDE+D I K
Sbjct: 306 AFSPSIIFIDEIDAIGSK 323