Miyakogusa Predicted Gene

Lj5g3v1176670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1176670.1 Non Chatacterized Hit- tr|C6T5N3|C6T5N3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9678 PE=,72.31,2e-19,no
description,Nucleic acid-binding,
OB-fold,gene.Ljchr5_pseudomol_20120830.path1.gene3871.1
         (65 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g34690.1                                                       101   2e-22
Glyma20g34690.3                                                       100   7e-22
Glyma20g34690.2                                                       100   7e-22

>Glyma20g34690.1 
          Length = 198

 Score =  101 bits (251), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 54/65 (83%), Gaps = 2/65 (3%)

Query: 1   MADYRYFPGENAYFMNEKSSKIANDVTVRFLVIGTRWMETKRGFELHALVSLEGNYLGPI 60
           M DYRY PGENA FMN+K SKI  DVTVRF VIGT+WME +R F+  ALVSLEG+YLGPI
Sbjct: 136 MPDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQ--ALVSLEGDYLGPI 193

Query: 61  ASPDI 65
           ++PDI
Sbjct: 194 STPDI 198


>Glyma20g34690.3 
          Length = 180

 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 54/65 (83%), Gaps = 2/65 (3%)

Query: 1   MADYRYFPGENAYFMNEKSSKIANDVTVRFLVIGTRWMETKRGFELHALVSLEGNYLGPI 60
           M DYRY PGENA FMN+K SKI  DVTVRF VIGT+WME +R F+  ALVSLEG+YLGPI
Sbjct: 118 MPDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQ--ALVSLEGDYLGPI 175

Query: 61  ASPDI 65
           ++PDI
Sbjct: 176 STPDI 180


>Glyma20g34690.2 
          Length = 180

 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 54/65 (83%), Gaps = 2/65 (3%)

Query: 1   MADYRYFPGENAYFMNEKSSKIANDVTVRFLVIGTRWMETKRGFELHALVSLEGNYLGPI 60
           M DYRY PGENA FMN+K SKI  DVTVRF VIGT+WME +R F+  ALVSLEG+YLGPI
Sbjct: 118 MPDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQ--ALVSLEGDYLGPI 175

Query: 61  ASPDI 65
           ++PDI
Sbjct: 176 STPDI 180