Miyakogusa Predicted Gene

Lj5g3v1174300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1174300.1 tr|A9RXM1|A9RXM1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71882
,27.27,0.00000000000004,no description,DNA double-strand break repair
and VJ recombination XRCC4, N-terminal; no description,CUFF.54888.1
         (260 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g32840.1                                                       332   4e-91
Glyma20g34800.1                                                       329   2e-90

>Glyma10g32840.1 
          Length = 256

 Score =  332 bits (850), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 168/255 (65%), Positives = 189/255 (74%), Gaps = 4/255 (1%)

Query: 4   TKRHTCLKLQIPNANETIFVKGTWFDTHFDLAITDGVAAWHCHASEDEVKQRAAQWDQPV 63
           T+R +C KL +P   E IFVK TWF THF LA+TDG+ AWHCH SE+EVKQRAAQWD PV
Sbjct: 5   TERFSCSKLLVPKG-EPIFVKATWFPTHFHLAVTDGITAWHCHPSEEEVKQRAAQWDLPV 63

Query: 64  SEYVEMSERYLGFQQPGSVYAFADPGDGHKRLSWTFEKEGMTLQWRWKCLQSSDCKKTTA 123
           SEY+ +SERYLG QQPGSVYA  D GDGHKRLSWTFEKEGMTL WRWKCL S D KK+  
Sbjct: 64  SEYLNLSERYLGLQQPGSVYALDDAGDGHKRLSWTFEKEGMTLLWRWKCLLSPDSKKSNV 123

Query: 124 EILDFLMDANITLSEEVVRKNELFEKMKEESEKCLAQSEKIAKEKVEFESEIYVKFLGVL 183
           EILDFLM +NI LS++VVR+NELFEKMK E+EKCL QSE+IA E++EFESEIY KFLGVL
Sbjct: 124 EILDFLMGSNINLSDKVVRENELFEKMKVEAEKCLTQSERIANERLEFESEIYAKFLGVL 183

Query: 184 NSKKSKLRELRDQLSKQDKAEKSPPQEEEDTDKTXXXXXXXXXXXXXXXXXXXXXXXXXX 243
           NSKKSKLRELRD+L+K +  EKSP  EEEDTDKT                          
Sbjct: 184 NSKKSKLRELRDKLAKPENTEKSP--EEEDTDKTESFDEESDFDRSDEDPQKDISSSSKD 241

Query: 244 VIRARKPSGRKRTTR 258
           V+ A KPS  KRT R
Sbjct: 242 VM-ANKPSCPKRTRR 255


>Glyma20g34800.1 
          Length = 241

 Score =  329 bits (844), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/216 (74%), Positives = 180/216 (83%), Gaps = 3/216 (1%)

Query: 2   EETKRHTCLKLQIPNANETIFVKGTWFDTHFDLAITDGVAAWHCHASEDEVKQRAAQWDQ 61
           EET+R +C KL IP   E IFVK TWF THF LA+TDG+ AWHCH S +EVKQRAAQWD 
Sbjct: 3   EETERFSCSKLLIPKG-EPIFVKATWFPTHFHLAVTDGITAWHCHPSAEEVKQRAAQWDL 61

Query: 62  PVSEYVEMSERYLGFQQPGSVYAFADPGDGHKRLSWTFEKEGMTLQWRWKCLQSSDCKKT 121
           PVSEY+ +SERYLG QQPGSVYAF D GD HKRLSWTFEKEGMTL WRWKCL S D KK+
Sbjct: 62  PVSEYLNLSERYLGLQQPGSVYAFDDAGDSHKRLSWTFEKEGMTLLWRWKCLLSPDSKKS 121

Query: 122 TAEILDFLMDANITLSEEVVRKNELFEKMKEESEKCLAQSEKIAKEKVEFESEIYVKFLG 181
             EILDFLM +NI LS++VV +NELFEKMK E+EKCL QSE+IA E++EFESEIY KFLG
Sbjct: 122 NVEILDFLMGSNINLSDKVVTENELFEKMKVEAEKCLTQSERIANERLEFESEIYAKFLG 181

Query: 182 VLNSKKSKLRELRDQLSKQDKAEKSPPQEEEDTDKT 217
           VLNSKKSKLR LRD+LSKQ+ +EKSP  EEEDTDKT
Sbjct: 182 VLNSKKSKLRVLRDKLSKQENSEKSP--EEEDTDKT 215