Miyakogusa Predicted Gene

Lj5g3v1096020.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1096020.2 tr|C3US34|C3US34_9BRAS At4g21150-like protein
(Fragment) OS=Capsella grandiflora PE=4 SV=1,57.58,0.004,seg,NULL;
Ribophorin_II,Ribophorin II; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN
II,Ribophorin II,CUFF.54770.2
         (199 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g04380.2                                                       295   2e-80
Glyma10g04380.1                                                       293   7e-80
Glyma03g32140.2                                                       266   7e-72
Glyma03g32140.1                                                       266   7e-72
Glyma19g34900.1                                                       221   4e-58

>Glyma10g04380.2 
          Length = 522

 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/165 (87%), Positives = 156/165 (94%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           +DGTFYFDEK + GHE  GSLSTT+SVVRGVTAFAAVTSGKINL GDKILGLAKFFLGIG
Sbjct: 224 EDGTFYFDEKYVGGHEQRGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLAKFFLGIG 283

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFFNQVESLAFLESNRISIPLILSLPET YSLT KGQ+KV+VNTVLGS APPLT
Sbjct: 284 IPGDAKDFFNQVESLAFLESNRISIPLILSLPETAYSLTKKGQLKVKVNTVLGSAAPPLT 343

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKLV+AFSTGAKDSAIID+KEL+Y+++SGF+ LDALPKNVDVGTY
Sbjct: 344 VKLVRAFSTGAKDSAIIDSKELRYDQESGFHVLDALPKNVDVGTY 388


>Glyma10g04380.1 
          Length = 689

 Score =  293 bits (750), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 144/165 (87%), Positives = 156/165 (94%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           +DGTFYFDEK + GHE  GSLSTT+SVVRGVTAFAAVTSGKINL GDKILGLAKFFLGIG
Sbjct: 224 EDGTFYFDEKYVGGHEQRGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLAKFFLGIG 283

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFFNQVESLAFLESNRISIPLILSLPET YSLT KGQ+KV+VNTVLGS APPLT
Sbjct: 284 IPGDAKDFFNQVESLAFLESNRISIPLILSLPETAYSLTKKGQLKVKVNTVLGSAAPPLT 343

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKLV+AFSTGAKDSAIID+KEL+Y+++SGF+ LDALPKNVDVGTY
Sbjct: 344 VKLVRAFSTGAKDSAIIDSKELRYDQESGFHVLDALPKNVDVGTY 388


>Glyma03g32140.2 
          Length = 687

 Score =  266 bits (681), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 147/165 (89%), Gaps = 1/165 (0%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           DDGTFYFDEK + G EH GSLSTT+SVVRGVTAFAAVTSGKINL GDKILGLA FFLGIG
Sbjct: 223 DDGTFYFDEKFVGGREHQGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLANFFLGIG 282

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFFNQVESLA LE+N++SIPL+LSLP TVYSL+ K Q+KVRVNTVLGS APPLT
Sbjct: 283 IPGDAKDFFNQVESLALLENNKVSIPLVLSLPATVYSLSKKDQLKVRVNTVLGSAAPPLT 342

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKLVQAF + AKDSA I++KELQY++ +G +FL+A P NVDVGTY
Sbjct: 343 VKLVQAFRSNAKDSA-IESKELQYDQNNGIHFLEAFPDNVDVGTY 386


>Glyma03g32140.1 
          Length = 687

 Score =  266 bits (681), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 147/165 (89%), Gaps = 1/165 (0%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           DDGTFYFDEK + G EH GSLSTT+SVVRGVTAFAAVTSGKINL GDKILGLA FFLGIG
Sbjct: 223 DDGTFYFDEKFVGGREHQGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLANFFLGIG 282

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFFNQVESLA LE+N++SIPL+LSLP TVYSL+ K Q+KVRVNTVLGS APPLT
Sbjct: 283 IPGDAKDFFNQVESLALLENNKVSIPLVLSLPATVYSLSKKDQLKVRVNTVLGSAAPPLT 342

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKLVQAF + AKDSA I++KELQY++ +G +FL+A P NVDVGTY
Sbjct: 343 VKLVQAFRSNAKDSA-IESKELQYDQNNGIHFLEAFPDNVDVGTY 386


>Glyma19g34900.1 
          Length = 763

 Score =  221 bits (563), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/187 (63%), Positives = 137/187 (73%), Gaps = 22/187 (11%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           DDGTFYFDEK + G EH GSLSTT+SVV+GVTAFAAVTSGKINL GDKILGLA FFLGIG
Sbjct: 276 DDGTFYFDEKFVGGSEHQGSLSTTSSVVQGVTAFAAVTSGKINLPGDKILGLANFFLGIG 335

Query: 68  IPGDAKDFFNQVESLAFLESNR---ISIPLILSLPETVYSLTNKG--------------- 109
           IPGDAKDFFNQVESLA LE+NR   I +  IL     ++ + +K                
Sbjct: 336 IPGDAKDFFNQVESLALLENNRQLYIDVSFILYRYIDLFMIFSKNMYLGFLLVVISCQNP 395

Query: 110 ----QVKVRVNTVLGSVAPPLTVKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPK 165
               Q  VRVNTVLGS APPLTVKLV+AF + AKDSAII++KELQY++ +G + L+A P 
Sbjct: 396 ELVSQNLVRVNTVLGSAAPPLTVKLVRAFRSDAKDSAIIESKELQYDQNNGIHVLEAFPN 455

Query: 166 NVDVGTY 172
           NVDVGTY
Sbjct: 456 NVDVGTY 462