Miyakogusa Predicted Gene
- Lj5g3v1073870.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1073870.2 tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max PE=3 SV=1,86.53,0,seg,NULL; SMC
proteins Flexible Hinge Domain,SMCs flexible hinge;
SMC_N,RecF/RecN/SMC; SMC_hinge,SMC,CUFF.54763.2
(594 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g18470.1 887 0.0
Glyma10g04300.2 886 0.0
Glyma10g04300.1 883 0.0
Glyma19g02680.1 97 4e-20
Glyma13g05430.1 97 6e-20
Glyma13g27210.1 89 2e-17
Glyma12g36520.1 87 4e-17
Glyma04g27750.1 68 4e-11
Glyma09g14100.1 63 1e-09
Glyma14g04930.1 59 2e-08
>Glyma13g18470.1
Length = 1266
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/593 (75%), Positives = 480/593 (80%)
Query: 1 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60
MPSLLSPGKIH LE+ENFKSYKGFQVIGPFYDFTAI+GPNGAGKSNLMDAISFVLGVRTG
Sbjct: 1 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAILGPNGAGKSNLMDAISFVLGVRTG 60
Query: 61 QLRGAQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGNL 120
QLRGAQLKDLIYAFDDREKEQ+GRRAFVRLVY LAN++EI+FTRTITSAGASEYRID +L
Sbjct: 61 QLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIKFTRTITSAGASEYRIDESL 120
Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQF 180
VNWD YN +LKSLGILVKARNFLVFQGDVESIASKNPKELT L+EQISGSDE KRDYEQF
Sbjct: 121 VNWDTYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQF 180
Query: 181 XXXXXXXXXXSALIYQKKKTVVMXXXXXXXXXXXXXXHLRLQEQLKSVKKEHFLWQLFNI 240
SAL+YQKKKTVVM HL LQ++LKS+K EHFLW+LFNI
Sbjct: 181 EEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLCLQQELKSMKGEHFLWKLFNI 240
Query: 241 ENDIXXXXXXXXXXXXSRLAVIEELGNFXXXXXXXXXXXXXXXXXIALREKKITEKSNKL 300
ND SR V++EL F IALREK+I EKSNKL
Sbjct: 241 HNDYAETIKDLEDEEKSREGVVKELEYFESEASKKKKEQAKYLKEIALREKRIAEKSNKL 300
Query: 301 DKSQPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDLAAKMADLQ 360
DKSQPELLKLKEEMTRI S H ADIA LQ IQDL AKMADLQ
Sbjct: 301 DKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERTKHDADIALLQNDIQDLTAKMADLQ 360
Query: 361 EKSRGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEENLQ 420
EK R V + YFRIKEEAGMKTAKLREEKELLDR+ +ADSEAQKN EENLQ
Sbjct: 361 EKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQ 420
Query: 421 QLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENLKL 480
QLRNRESELNSQEEQM+ARL+KI+D+SAKNK GL NLKKELRVMQDKHRDSKKKYENLKL
Sbjct: 421 QLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKL 480
Query: 481 KIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAVTV 540
KIGELENQLRELKADR+ENERD +LSQAVETLKRLFQGVHGR+T+LCRPTQKKYNLAVTV
Sbjct: 481 KIGELENQLRELKADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTV 540
Query: 541 AMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRALG 593
AMGKFMDAVVV++EKTGKECIKYLKDQRLPPQTFIPL+S+RVKPIMERLR LG
Sbjct: 541 AMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLG 593
>Glyma10g04300.2
Length = 1123
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/592 (75%), Positives = 479/592 (80%)
Query: 1 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60
MPSLLSPGKIH LE+ENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG
Sbjct: 1 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60
Query: 61 QLRGAQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGNL 120
QLRGAQLKDLIYAFDDREKEQ+GRRAFVRLVY LAN++EI+FTRTITSAGASEYRID +L
Sbjct: 61 QLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIKFTRTITSAGASEYRIDESL 120
Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQF 180
VNW+ YN +LKSLGILVKARNFLVFQGDVESIASKNPKELT L+EQISGSDE KRDYEQF
Sbjct: 121 VNWETYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQF 180
Query: 181 XXXXXXXXXXSALIYQKKKTVVMXXXXXXXXXXXXXXHLRLQEQLKSVKKEHFLWQLFNI 240
SAL+YQKKKTVVM HLRLQ++LKS+K EHFLW+LFNI
Sbjct: 181 EEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQQELKSMKGEHFLWKLFNI 240
Query: 241 ENDIXXXXXXXXXXXXSRLAVIEELGNFXXXXXXXXXXXXXXXXXIALREKKITEKSNKL 300
ND SR V++EL F IALREK+I EK NKL
Sbjct: 241 HNDYAETIKDLEDEEKSREGVVKELEYFESEASKKKKEQAKYLKEIALREKRIAEKGNKL 300
Query: 301 DKSQPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDLAAKMADLQ 360
DKSQPELLKLKEEMTRI S H ADIA LQ IQDL AKMADLQ
Sbjct: 301 DKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERKKHDADIALLQNDIQDLTAKMADLQ 360
Query: 361 EKSRGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEENLQ 420
EK R V + YFRIKEEAGMKTAKLREEKELLDR+ +ADSEAQKN EENLQ
Sbjct: 361 EKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQ 420
Query: 421 QLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENLKL 480
QLRNRESELNSQEEQM+ARL+KI+D+SAKNK GL NLKKELRVMQDKHRDSKKKYENLKL
Sbjct: 421 QLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKL 480
Query: 481 KIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAVTV 540
KIGELENQLRELKADR+ENERD +LSQAVETLKRLFQGVHGR+T+LCRPTQKKYNLAVTV
Sbjct: 481 KIGELENQLRELKADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTV 540
Query: 541 AMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRAL 592
AMGKFMDAVVV++EKTGKECIKYLKDQRLPPQTFIPL+S+RVKPIMERLR L
Sbjct: 541 AMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTL 592
>Glyma10g04300.1
Length = 1283
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/592 (75%), Positives = 479/592 (80%)
Query: 1 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60
MPSLLSPGKIH LE+ENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG
Sbjct: 1 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60
Query: 61 QLRGAQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGNL 120
QLRGAQLKDLIYAFDDREKEQ+GRRAFVRLVY LAN++EI+FTRTITSAGASEYRID +L
Sbjct: 61 QLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIKFTRTITSAGASEYRIDESL 120
Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQF 180
VNW+ YN +LKSLGILVKARNFLVFQGDVESIASKNPKELT L+EQISGSDE KRDYEQF
Sbjct: 121 VNWETYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQF 180
Query: 181 XXXXXXXXXXSALIYQKKKTVVMXXXXXXXXXXXXXXHLRLQEQLKSVKKEHFLWQLFNI 240
SAL+YQKKKTVVM HLRLQ++LKS+K EHFLW+LFNI
Sbjct: 181 EEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQQELKSMKGEHFLWKLFNI 240
Query: 241 ENDIXXXXXXXXXXXXSRLAVIEELGNFXXXXXXXXXXXXXXXXXIALREKKITEKSNKL 300
ND SR V++EL F IALREK+I EK NKL
Sbjct: 241 HNDYAETIKDLEDEEKSREGVVKELEYFESEASKKKKEQAKYLKEIALREKRIAEKGNKL 300
Query: 301 DKSQPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDLAAKMADLQ 360
DKSQPELLKLKEEMTRI S H ADIA LQ IQDL AKMADLQ
Sbjct: 301 DKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERKKHDADIALLQNDIQDLTAKMADLQ 360
Query: 361 EKSRGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEENLQ 420
EK R V + YFRIKEEAGMKTAKLREEKELLDR+ +ADSEAQKN EENLQ
Sbjct: 361 EKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQ 420
Query: 421 QLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENLKL 480
QLRNRESELNSQEEQM+ARL+KI+D+SAKNK GL NLKKELRVMQDKHRDSKKKYENLKL
Sbjct: 421 QLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKL 480
Query: 481 KIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAVTV 540
KIGELENQLRELKADR+ENERD +LSQAVETLKRLFQGVHGR+T+LCRPTQKKYNLAVTV
Sbjct: 481 KIGELENQLRELKADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTV 540
Query: 541 AMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRAL 592
AMGKFMDAVVV++EKTGKECIKYLKDQRLPPQTFIPL+S+RVKPIMERLR L
Sbjct: 541 AMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTL 592
>Glyma19g02680.1
Length = 1228
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 10 IHRLEMENFKSYKGFQVIGPFY-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
I + M NFKSY G Q +GPF+ F+A++GPNG+GKSN++DA+ FV G R Q+R ++
Sbjct: 25 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVS 84
Query: 69 DLIYAFDDREK-EQRGRRA-FVRLV------YQLANNSEIQFTRTITSAGASEYRIDGNL 120
+LI+ + + + G F +V Y+ S+ TR +S+Y I+ +
Sbjct: 85 ELIHNSTNHQNLDSAGVSVHFQEIVDSDDGTYEAVPGSDFVITRVAFRDNSSKYYINNHT 144
Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPK 158
N+ KLK G+ + FL+ QG+VE I+ PK
Sbjct: 145 SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 182
>Glyma13g05430.1
Length = 1248
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 10 IHRLEMENFKSYKGFQVIGPFY-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
I + M NFKSY G Q +GPF+ F+A++GPNG+GKSN++DA+ FV G R Q+R ++
Sbjct: 25 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVS 84
Query: 69 DLIYAFDDREK-EQRGRRA-FVRLV------YQLANNSEIQFTRTITSAGASEYRIDGNL 120
+LI+ + + + G F +V Y+ S+ TR +S+Y I+
Sbjct: 85 ELIHNSTNHQNLDSAGVSVHFQEIVDSDDGTYEAVAGSDFVITRVAFRDNSSKYYINDRT 144
Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPK 158
N+ KLK G+ + FL+ QG+VE I+ PK
Sbjct: 145 SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 182
>Glyma13g27210.1
Length = 1171
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 20/175 (11%)
Query: 10 IHRLEMENFKSYKGFQVIGPFYD--FTAIIGPNGAGKSNLMDAISFVLGVRT-GQLRGAQ 66
I + +E FKSY V+ P +D F AI G NG+GKSN++D+I FVLG+ Q+R +
Sbjct: 3 IKEICLEGFKSYATRTVV-PGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASN 61
Query: 67 LKDLIYAFDDREKEQRG-RRAFVRLVYQLAN----------NSEIQFTRTITSAGASEYR 115
L++L+Y ++ Q G +A V +V+ +N +SEI TR I G ++Y
Sbjct: 62 LQELVY-----KQGQAGITKATVSVVFDNSNSSRSPLGYEGHSEITVTRQIVVGGRNKYL 116
Query: 116 IDGNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
I+G L S+ + V +FL+ QG + + + P E+ ++E+ +G+
Sbjct: 117 INGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGT 171
>Glyma12g36520.1
Length = 1171
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 20/175 (11%)
Query: 10 IHRLEMENFKSYKGFQVIGPFYD--FTAIIGPNGAGKSNLMDAISFVLGVRT-GQLRGAQ 66
I + +E FKSY V+ P +D F AI G NG+GKSN++D+I FVLG+ Q+R +
Sbjct: 3 IKEICLEGFKSYATRTVV-PGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASN 61
Query: 67 LKDLIYAFDDREKEQRG-RRAFVRLVYQLAN----------NSEIQFTRTITSAGASEYR 115
L++L+Y ++ Q G +A V +V+ ++ +SEI TR I G ++Y
Sbjct: 62 LQELVY-----KQGQAGITKATVSVVFDNSHSSRSPLGYEGHSEITVTRQIVVGGRNKYL 116
Query: 116 IDGNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
I+G L S+ + V +FL+ QG + + + P+E+ ++E+ +G+
Sbjct: 117 INGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPQEILSMLEEAAGT 171
>Glyma04g27750.1
Length = 66
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/40 (75%), Positives = 33/40 (82%)
Query: 17 NFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLG 56
NF SYKGFQ+I P YDFTAII PN KSNL++AISFVLG
Sbjct: 1 NFNSYKGFQLISPIYDFTAIISPNDIDKSNLINAISFVLG 40
>Glyma09g14100.1
Length = 318
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 10 IHRLEMENFKSYKGFQVIGPFY-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLR 63
I + M NFKSY G Q +GPF+ F+ ++GPNG+GKSN++DA FV G R Q R
Sbjct: 9 IKEMVMRNFKSYAGEQRVGPFHKSFSVVVGPNGSGKSNVIDAKLFVFGKRAKQGR 63
>Glyma14g04930.1
Length = 1216
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 15 MENFKSYKGFQVIGPFYD-FTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYA 73
+E FKSY+ PF ++G NG+GK+N AI FVL LRG + L++
Sbjct: 3 IEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRGEDRQALLH- 61
Query: 74 FDDREKEQRGRR---AFVRLVYQLANN------SEIQFTRTITSAGASEYRIDG-NLVNW 123
E G + AFV +V+ ++N E++ RTI EY +DG ++
Sbjct: 62 ------EGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTI-GFKKDEYFLDGKHITKT 114
Query: 124 DIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
++ N L+S G ++V QG + S+ E L+++I G+
Sbjct: 115 EVMNL-LESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGT 160