Miyakogusa Predicted Gene

Lj5g3v0975900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0975900.2 Non Chatacterized Hit- tr|I3T9W4|I3T9W4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.31,0,RNA
polymerase subunit,RNA polymerase, Rpb8; DNA-DIRECTED RNA POLYMERASES
I, II, AND III SUBUNIT RPA,CUFF.54466.2
         (144 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g26790.5                                                       260   4e-70
Glyma02g26790.4                                                       260   4e-70
Glyma02g26790.3                                                       260   4e-70
Glyma02g26790.1                                                       260   4e-70
Glyma09g15750.2                                                       258   1e-69
Glyma09g15750.1                                                       258   1e-69
Glyma02g26790.2                                                       199   1e-51
Glyma02g26790.6                                                       193   5e-50
Glyma15g42430.1                                                       130   3e-31
Glyma08g15860.1                                                       122   9e-29

>Glyma02g26790.5 
          Length = 145

 Score =  260 bits (664), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 135/140 (96%)

Query: 5   LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
           LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6   LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65  LNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGD 124
           LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+I+EGSGREKAE+NISFGGLLMM+KGD
Sbjct: 66  LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGD 125

Query: 125 HSHCNKFELDQRLYLLMRKV 144
            SHCNKFELDQRLYLL+RKV
Sbjct: 126 TSHCNKFELDQRLYLLIRKV 145


>Glyma02g26790.4 
          Length = 145

 Score =  260 bits (664), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 135/140 (96%)

Query: 5   LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
           LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6   LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65  LNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGD 124
           LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+I+EGSGREKAE+NISFGGLLMM+KGD
Sbjct: 66  LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGD 125

Query: 125 HSHCNKFELDQRLYLLMRKV 144
            SHCNKFELDQRLYLL+RKV
Sbjct: 126 TSHCNKFELDQRLYLLIRKV 145


>Glyma02g26790.3 
          Length = 145

 Score =  260 bits (664), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 135/140 (96%)

Query: 5   LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
           LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6   LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65  LNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGD 124
           LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+I+EGSGREKAE+NISFGGLLMM+KGD
Sbjct: 66  LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGD 125

Query: 125 HSHCNKFELDQRLYLLMRKV 144
            SHCNKFELDQRLYLL+RKV
Sbjct: 126 TSHCNKFELDQRLYLLIRKV 145


>Glyma02g26790.1 
          Length = 145

 Score =  260 bits (664), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 135/140 (96%)

Query: 5   LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
           LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6   LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65  LNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGD 124
           LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+I+EGSGREKAE+NISFGGLLMM+KGD
Sbjct: 66  LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGD 125

Query: 125 HSHCNKFELDQRLYLLMRKV 144
            SHCNKFELDQRLYLL+RKV
Sbjct: 126 TSHCNKFELDQRLYLLIRKV 145


>Glyma09g15750.2 
          Length = 145

 Score =  258 bits (659), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 135/140 (96%)

Query: 5   LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
           LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV +
Sbjct: 6   LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEVYPLKVGQKFALVLVSS 65

Query: 65  LNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGD 124
           LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+I+EGSGREKAE+NISFGGLLMM+KGD
Sbjct: 66  LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGD 125

Query: 125 HSHCNKFELDQRLYLLMRKV 144
            SHCNKFELDQRLYLL+RKV
Sbjct: 126 TSHCNKFELDQRLYLLIRKV 145


>Glyma09g15750.1 
          Length = 145

 Score =  258 bits (659), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 135/140 (96%)

Query: 5   LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
           LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV +
Sbjct: 6   LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEVYPLKVGQKFALVLVSS 65

Query: 65  LNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGD 124
           LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+I+EGSGREKAE+NISFGGLLMM+KGD
Sbjct: 66  LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKAEMNISFGGLLMMLKGD 125

Query: 125 HSHCNKFELDQRLYLLMRKV 144
            SHCNKFELDQRLYLL+RKV
Sbjct: 126 TSHCNKFELDQRLYLLIRKV 145


>Glyma02g26790.2 
          Length = 107

 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/107 (86%), Positives = 102/107 (95%)

Query: 38  MFMHLDINSELYPLKVGQKFALLLVPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLY 97
           MFMHLDINSE+YPLKVGQKFAL+LV TLNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY
Sbjct: 1   MFMHLDINSEIYPLKVGQKFALVLVSTLNPDGTPDTGYYTQISRQSLANNFEYVMYGKLY 60

Query: 98  KISEGSGREKAELNISFGGLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           +I+EGSGREKAE+NISFGGLLMM+KGD SHCNKFELDQRLYLL+RKV
Sbjct: 61  RITEGSGREKAEMNISFGGLLMMLKGDTSHCNKFELDQRLYLLIRKV 107


>Glyma02g26790.6 
          Length = 124

 Score =  193 bits (491), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 100/104 (96%)

Query: 5   LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
           LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6   LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65  LNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREKA 108
           LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+I+EGSGREKA
Sbjct: 66  LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRITEGSGREKA 109


>Glyma15g42430.1 
          Length = 145

 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 23/155 (14%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LF+DIF+VEK++PD KK ++KV+RI ARSE+ DM+M LDIN+E+YP+   ++F + 
Sbjct: 1   MSELLFNDIFKVEKVDPDGKK-YDKVSRIVARSEKCDMYMLLDINTEIYPMGEKERFLMA 59

Query: 61  LVPTL---NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGREK--------AE 109
           L P+L     DG+            S+ D FEY+M+G+LY I++    EK         E
Sbjct: 60  LSPSLVLNTKDGSV-----------SIQDKFEYIMHGRLYNITKPQLEEKECSKPQLEVE 108

Query: 110 LNISFGGLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           +  SFGGL +M+KG  SHC KF +DQ+L+LL+RKV
Sbjct: 109 VYASFGGLQLMLKGHASHCVKFAVDQKLFLLIRKV 143


>Glyma08g15860.1 
          Length = 160

 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 38/170 (22%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LFDDIF+VEK++PD KK ++KV+RI ARSE+ DM M LD+N+E+YP+   ++F + 
Sbjct: 1   MSELLFDDIFKVEKVDPDGKK-YDKVSRIVARSEKCDMNMLLDVNTEIYPMGEKERFLMA 59

Query: 61  LVPTL---NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI--------------SEGS 103
           L P+L     DG+            S+ D FEY+M+G+LY I              SE  
Sbjct: 60  LSPSLVLNTKDGSV-----------SIQDKFEYIMHGRLYNITKPQLEKKEKKEKRSESQ 108

Query: 104 GREKAELN---------ISFGGLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
             E  E +          SFGGL +M+KG  SHC KF +DQ+L+LL+RKV
Sbjct: 109 PEENEECSKPQLEVEVYASFGGLQLMLKGHASHCVKFAVDQKLFLLIRKV 158