Miyakogusa Predicted Gene

Lj5g3v0962660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962660.1 tr|B9H1H5|B9H1H5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555374 PE=4
SV=1,43.48,9e-18,seg,NULL,CUFF.54362.1
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g30840.1                                                       126   6e-30
Glyma19g33670.1                                                       112   1e-25
Glyma10g03050.1                                                       111   3e-25

>Glyma03g30840.1 
          Length = 124

 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 41  LCASQLALVNYACARLPFTPGSPPSS-QLTSTNDDGEXXXXXXXXXXXXXXXXXXXPQEE 99
           LCASQ ALVNYAC+RLPF+PG PP S      N++                     P E+
Sbjct: 15  LCASQFALVNYACSRLPFSPGVPPDSPSPDEENNNHHNRSHRHGHRHGHRHRHHQTPDED 74

Query: 100 NCCRWAGELDSQCVCEILVRLPPFLTRPAHQYSVTIGESCNITYSCGGPI 149
           NCCRWA E+D QCVCE+L+RLPPFL RP+HQY++ +G SC+ITYSCG PI
Sbjct: 75  NCCRWAKEVDHQCVCELLLRLPPFLIRPSHQYTLKVGASCDITYSCGAPI 124


>Glyma19g33670.1 
          Length = 135

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 73/117 (62%), Gaps = 8/117 (6%)

Query: 41  LCASQLALVNYACARLPFTPGSPPSSQLTSTNDDGEXXXXXXXXXXXXXXX--------X 92
           LCASQ ALVNYAC+RLPF+ G PP S  T  + + E                        
Sbjct: 19  LCASQFALVNYACSRLPFSLGVPPDSPSTPPSPNDEEGHRNNHHNGSHRHGHRHGHKHRN 78

Query: 93  XXXPQEENCCRWAGELDSQCVCEILVRLPPFLTRPAHQYSVTIGESCNITYSCGGPI 149
                E+NCCRWA E+D+QCVCE+L+RLPPFL RP HQY++ +GESC+ITYSCG PI
Sbjct: 79  HQTADEDNCCRWAKEVDNQCVCELLLRLPPFLIRPLHQYTLNVGESCDITYSCGAPI 135


>Glyma10g03050.1 
          Length = 129

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 91/151 (60%), Gaps = 24/151 (15%)

Query: 1   MKRVKIFNFTITLALIFLASVPKMESRIXXXXXXXXXXXX--LCASQLALVNYACARLPF 58
           MKRVKIF   ITLAL F+A VPK+ES+I              LC SQLALV+YACA LP 
Sbjct: 1   MKRVKIF-ILITLALTFVAFVPKIESQIMPPLIPFPPPSLHPLCLSQLALVSYACAMLPP 59

Query: 59  TPGSPPSSQLTSTNDDGEXXXXXXXXXXXXXXXXXXXPQEENCCRWAGELDSQCVCEILV 118
           T   PPS      +                         EENCCRWA E+D+QCVCE L+
Sbjct: 60  TTTLPPSPLTPPPSPSS---------------------PEENCCRWAREMDNQCVCEFLL 98

Query: 119 RLPPFLTRPAHQYSVTIGESCNITYSCGGPI 149
            LPPFLTRP HQYS++IGESCN+TYSCGGPI
Sbjct: 99  LLPPFLTRPLHQYSISIGESCNVTYSCGGPI 129