Miyakogusa Predicted Gene
- Lj5g3v0921030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0921030.1 Non Chatacterized Hit- tr|I1NY64|I1NY64_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,64.71,6e-17,zinc
finger,Zinc finger, CCCH-type; K homology RNA-binding domain,K
Homology domain; no description,,CUFF.54231.1
(257 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma19g32910.1 268 5e-72
Glyma03g30030.1 266 2e-71
Glyma03g30020.1 248 4e-66
Glyma03g30020.2 199 2e-51
Glyma03g30030.2 199 2e-51
Glyma19g32910.2 199 3e-51
Glyma02g29360.1 186 2e-47
Glyma20g39160.1 149 4e-36
Glyma10g44330.1 146 2e-35
Glyma09g17210.1 78 1e-14
Glyma06g05400.1 51 1e-06
Glyma14g10670.1 51 1e-06
Glyma17g34850.1 51 1e-06
>Glyma19g32910.1
Length = 295
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 177/305 (58%), Gaps = 64/305 (20%)
Query: 1 MDFRKRGRSE--VAVNGAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHH 58
MD RKRGR E ++NG KK+KQEMESLSTGVGSK +PCTKFFSTAGCPFGE CHF H+
Sbjct: 1 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHY 60
Query: 59 VPGGYKVVEQMLNKNSIVATSQSSRNVVA-PPVLNXXXXXXXXX---------------- 101
VPGGY V M+N A +SRNV A PPV N
Sbjct: 61 VPGGYNAVAHMMNLTP--AAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGD 118
Query: 102 -------------------XXXRLIAPPGL-------------ASSFGXXXXXXXXXXXX 129
R + P G+ A+SFG
Sbjct: 119 KCHFAHGEWELGKHIAPSFDDHRTMGPTGVGRLAGRMEPPPGPAASFGANATAKISVEAS 178
Query: 130 XXGAIIGKGGENSKQICYQTGAKLSIREHESDPNLRNIELVGSFEQIENASNMVRELILT 189
GAIIGKGG NSKQIC QTGAKLSIREHESDPNLRNIEL GSFEQI+ ASNMV++L+LT
Sbjct: 179 LAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLT 238
Query: 190 GSMLAPPKSAPAVRGAPPKSAPAVRGAPTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGA 249
M APPK+ P V G APA G SNFKTKLC+NF KGSC +G+RCHFAHGA
Sbjct: 239 LQMSAPPKTTPGVPG-----APASHG------SNFKTKLCENFTKGSCTFGDRCHFAHGA 287
Query: 250 ANLRK 254
A LRK
Sbjct: 288 AELRK 292
>Glyma03g30030.1
Length = 295
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/304 (51%), Positives = 177/304 (58%), Gaps = 62/304 (20%)
Query: 1 MDFRKRGRSE--VAVNGAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHH 58
MD RKRGR E ++NG KK+KQEMESLSTGVGSK +PCTKFFSTAGCPFGE CHF H+
Sbjct: 1 MDIRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHY 60
Query: 59 VPGGYKVVEQMLNKNSIVATSQSSRNVVA-PPVLNXXXXXXXXX---------------- 101
VPGGY V M+N + A +RNV A P V N
Sbjct: 61 VPGGYNAVAHMMNL-TPAAPLPPTRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGD 119
Query: 102 -------------------XXXRLIAPPGL------------ASSFGXXXXXXXXXXXXX 130
R + PPG A+SFG
Sbjct: 120 KCHFAHGEWELGKHIAPSFDDHRAMGPPGAGRLAGRMEPPGPAASFGANSTAKISVEASL 179
Query: 131 XGAIIGKGGENSKQICYQTGAKLSIREHESDPNLRNIELVGSFEQIENASNMVRELILTG 190
GAIIGKGG NSKQIC QTGAKLSIREHESDPNLRNIEL GSFEQI+ ASNMV++L+LT
Sbjct: 180 AGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTL 239
Query: 191 SMLAPPKSAPAVRGAPPKSAPAVRGAPTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAA 250
M APPK+ P V G APA G SNFKTKLC+NFAKGSC +G+RCHFAHGA+
Sbjct: 240 QMSAPPKTTPGVPG-----APASHG------SNFKTKLCENFAKGSCTFGDRCHFAHGAS 288
Query: 251 NLRK 254
LRK
Sbjct: 289 ELRK 292
>Glyma03g30020.1
Length = 295
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/315 (48%), Positives = 175/315 (55%), Gaps = 84/315 (26%)
Query: 1 MDFRKRGRSEV--AVNGAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRH- 57
MD RKRGR E ++NG K++KQEMESLSTGVGSK +PCTKFFSTAGCPFGE CHF H
Sbjct: 1 MDIRKRGRHETGFSLNGGFKRSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHY 60
Query: 58 ------------------------------HVPGGYK---VVEQMLNKNSI--------- 75
HVP G V ++ NK +
Sbjct: 61 VPGGYNAVAHMMNLTPAAPPPPSRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDK 120
Query: 76 -------------VATSQSSRNVVAPPVLNXXXXXXXXXXXXRL---IAPPGLASSFGXX 119
+A S + + PP RL + PPG A+SFG
Sbjct: 121 CHFAHGEWELGKHIAPSFDDHHAMGPP------------GAGRLAGRMEPPGPAASFGAN 168
Query: 120 XXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIREHESDPNLRNIELVGSFEQIENA 179
GAIIGKGG NSKQIC QTGAKLSIREHESDPNLRNIEL GSFEQI+ A
Sbjct: 169 STAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEA 228
Query: 180 SNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRGAPTPLRSNFKTKLCQNFAKGSCAY 239
SNMV++L+LT M APPK+ P V G APA G SNFKTKLC+NFAKGSC +
Sbjct: 229 SNMVKDLLLTLQMSAPPKTTPGVPG-----APASHG------SNFKTKLCENFAKGSCTF 277
Query: 240 GERCHFAHGAANLRK 254
G+RCHFAHGA+ LRK
Sbjct: 278 GDRCHFAHGASELRK 292
>Glyma03g30020.2
Length = 225
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 133/220 (60%), Gaps = 36/220 (16%)
Query: 38 CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXX 97
C KF + GC FG+ CHF H E L K+ +A S + + PP
Sbjct: 36 CNKFNTAEGCKFGDKCHFAHG--------EWELGKH--IAPSFDDHHAMGPP-------- 77
Query: 98 XXXXXXXRL---IAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLS 154
RL + PPG A+SFG GAIIGKGG NSKQIC QTGAKLS
Sbjct: 78 ----GAGRLAGRMEPPGPAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLS 133
Query: 155 IREHESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVR 214
IREHESDPNLRNIEL GSFEQI+ ASNMV++L+LT M APPK+ P V G APA
Sbjct: 134 IREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPG-----APASH 188
Query: 215 GAPTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
G SNFKTKLC+NFAKGSC +G+RCHFAHGA+ LRK
Sbjct: 189 G------SNFKTKLCENFAKGSCTFGDRCHFAHGASELRK 222
>Glyma03g30030.2
Length = 225
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 132/220 (60%), Gaps = 36/220 (16%)
Query: 38 CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXX 97
C KF + GC FG+ CHF H E L K+ +A S + PP
Sbjct: 36 CNKFNTAEGCKFGDKCHFAHG--------EWELGKH--IAPSFDDHRAMGPP-------- 77
Query: 98 XXXXXXXRL---IAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLS 154
RL + PPG A+SFG GAIIGKGG NSKQIC QTGAKLS
Sbjct: 78 ----GAGRLAGRMEPPGPAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLS 133
Query: 155 IREHESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVR 214
IREHESDPNLRNIEL GSFEQI+ ASNMV++L+LT M APPK+ P V G APA
Sbjct: 134 IREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPG-----APASH 188
Query: 215 GAPTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
G SNFKTKLC+NFAKGSC +G+RCHFAHGA+ LRK
Sbjct: 189 G------SNFKTKLCENFAKGSCTFGDRCHFAHGASELRK 222
>Glyma19g32910.2
Length = 225
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 130/217 (59%), Gaps = 29/217 (13%)
Query: 38 CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXX 97
C KF + GC FG+ CHF H E L K+ +A S + P +
Sbjct: 35 CNKFNTAEGCKFGDKCHFAHG--------EWELGKH--IAPSFDDHRTMGPTGVGRLAG- 83
Query: 98 XXXXXXXRLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIRE 157
R+ PPG A+SFG GAIIGKGG NSKQIC QTGAKLSIRE
Sbjct: 84 -------RMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRE 136
Query: 158 HESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRGAP 217
HESDPNLRNIEL GSFEQI+ ASNMV++L+LT M APPK+ P V G APA G
Sbjct: 137 HESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPG-----APASHG-- 189
Query: 218 TPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
SNFKTKLC+NF KGSC +G+RCHFAHGAA LRK
Sbjct: 190 ----SNFKTKLCENFTKGSCTFGDRCHFAHGAAELRK 222
>Glyma02g29360.1
Length = 295
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 130/217 (59%), Gaps = 26/217 (11%)
Query: 38 CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXX 97
C KF + GC FG+ CHF H G +++ + + + + PP
Sbjct: 102 CNKFNTAEGCKFGDKCHFAH---GEWELGKPI----APSIDDHHHHRPLGPPA------- 147
Query: 98 XXXXXXXRLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIRE 157
R+ PP +A SFG GAIIGKGG NSKQIC QTGAKLSIRE
Sbjct: 148 -GGRMAGRIEPPPAMAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRE 206
Query: 158 HESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRGAP 217
HESDPNLRNIEL G+FEQI+ ASNMV++L+LT SM APPKS P V GAP
Sbjct: 207 HESDPNLRNIELEGTFEQIKEASNMVKDLLLTVSM-----------SAPPKSTPGVPGAP 255
Query: 218 TPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
P SNFKTKLC+NFAKGSC +GERCHFAHGAA LRK
Sbjct: 256 APPGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRK 292
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 70/91 (76%), Gaps = 3/91 (3%)
Query: 1 MDFRKRGRSEVAVNGAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHHVP 60
MD RKRGR +V +NGA+KKTKQE+ESLS+GVGSK +PCTKFFSTAGCPFGE CHF H+VP
Sbjct: 1 MDVRKRGRPDVNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVP 60
Query: 61 GGYKVVEQMLNKNSIVATSQSSRNVVAPPVL 91
GGY VV M+N + + R V APP +
Sbjct: 61 GGYNVVAHMMN---LKPAAPPPRTVAAPPPI 88
>Glyma20g39160.1
Length = 297
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 112/219 (51%), Gaps = 31/219 (14%)
Query: 38 CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSR--NVVAPPVLNXXX 95
C KF + GC FG+ CHF H + ++ SSR V PP
Sbjct: 105 CNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVLGQMPSSRVGGRVEPPHPAHGA 164
Query: 96 XXXXXXXXXRLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSI 155
I+ GA+IGK G NSKQIC TGAKLSI
Sbjct: 165 AASFGASATAKIS-----------------INASLAGAVIGKNGVNSKQICRVTGAKLSI 207
Query: 156 REHESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRG 215
R+H++DPNLRNIEL GSF+QI+ AS MV E+IL S + G P KS +
Sbjct: 208 RDHDTDPNLRNIELEGSFDQIKQASAMVHEVILNVS---------SASGPPMKSFTSQTS 258
Query: 216 APTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
APT SNFKTKLC+NFAKGSC +GERCHFAHG LRK
Sbjct: 259 APT---SNFKTKLCENFAKGSCTFGERCHFAHGTDELRK 294
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 3/90 (3%)
Query: 1 MDFRKRGRSEVAVN--GAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHH 58
MD RKRGR E A N G KK++ E +S TG+GSK +PCTKFFST+GCPFGE CHF H+
Sbjct: 1 MD-RKRGRPEAAFNFNGGAKKSRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHY 59
Query: 59 VPGGYKVVEQMLNKNSIVATSQSSRNVVAP 88
VPGG+K V Q++N S T Q RN V P
Sbjct: 60 VPGGFKAVSQLINVGSNPVTPQVGRNPVPP 89
>Glyma10g44330.1
Length = 297
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 111/219 (50%), Gaps = 31/219 (14%)
Query: 38 CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSR--NVVAPPVLNXXX 95
C KF + GC FG+ CHF H + ++ SSR V PP
Sbjct: 105 CNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRVGGRVEPPHPAHGA 164
Query: 96 XXXXXXXXXRLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSI 155
I+ GA+IGK G NSKQIC TGAKLSI
Sbjct: 165 AASFGASATAKIS-----------------INASLAGAVIGKNGVNSKQICRVTGAKLSI 207
Query: 156 REHESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRG 215
R+H++DPNLRNIEL GSF+QI+ AS MV E+IL S + G P KS +
Sbjct: 208 RDHDTDPNLRNIELEGSFDQIKQASAMVHEVILNVS---------SASGPPMKSFTSQNS 258
Query: 216 APTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
AP SNFKTKLC+NFAKGSC +GERCHFAHG LRK
Sbjct: 259 APA---SNFKTKLCENFAKGSCTFGERCHFAHGNDELRK 294
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 3/90 (3%)
Query: 1 MDFRKRGRSEVAVN--GAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHH 58
MD RKRGR E A N G KK++ EM+S TG+GSK +PCTKFFST+GCPFGE CHF H+
Sbjct: 1 MD-RKRGRHEAAFNFNGGAKKSRPEMDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHY 59
Query: 59 VPGGYKVVEQMLNKNSIVATSQSSRNVVAP 88
VPGG+K V Q++N S Q RN V P
Sbjct: 60 VPGGFKAVSQLINVGSNPVIPQVGRNPVPP 89
>Glyma09g17210.1
Length = 143
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 70/150 (46%), Gaps = 39/150 (26%)
Query: 105 RLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIREHESDPNL 164
RL PP LA +FG IIG G NSKQIC Q + E + L
Sbjct: 25 RLEPPPALAGNFGAISTTK----------IIG--GVNSKQICPQ--------KKELNFQL 64
Query: 165 RNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRGAPTPLRSNF 224
N++L+ E + N+ ++ L K P P PL SNF
Sbjct: 65 ENMKLIQILETL-NSRELLNRL---------RKQVTWCSWCP---------CPLPLGSNF 105
Query: 225 KTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
KTKLC+NFAKGSC GERC+FAH AA LRK
Sbjct: 106 KTKLCENFAKGSCTSGERCYFAHRAAELRK 135
>Glyma06g05400.1
Length = 554
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 132 GAIIGKGGENSKQICYQTGAKLSI-REHESDPN--LRNIELVGSFEQIENASNMVRELI 187
G IIGKGGE K + Q+GAK+ I R+ ++DPN R +EL+G+ E I +A ++ E++
Sbjct: 96 GVIIGKGGETIKYLQLQSGAKIQITRDIDADPNSSTRTVELMGTPEAISSAEKLINEVL 154
>Glyma14g10670.1
Length = 627
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 132 GAIIGKGGENSKQICYQTGAKLSI-REHESDPN--LRNIELVGSFEQIENASNMVRELI 187
G IIGKGGE K + Q+GAK+ + R+ ++DPN R +EL+GS + I A ++ E++
Sbjct: 134 GVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVELMGSPDAIATAEKLINEVL 192
>Glyma17g34850.1
Length = 672
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 132 GAIIGKGGENSKQICYQTGAKLSI-REHESDPN--LRNIELVGSFEQIENASNMVRELI 187
G IIGKGGE K + Q+GAK+ + R+ ++DPN R +EL+GS + I A ++ E++
Sbjct: 136 GVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVELMGSPDAIATAEKLINEVL 194