Miyakogusa Predicted Gene

Lj5g3v0866920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0866920.1 Non Chatacterized Hit- tr|B4FT43|B4FT43_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,63.89,9e-19,HOMEOBOX_2,Homeodomain; Homeobox,Homeodomain;
coiled-coil,NULL; no description,Homeodomain-like;
Hom,NODE_59246_length_311_cov_30.212219.path2.1
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g18490.1                                                       142   6e-35
Glyma06g35560.1                                                       141   1e-34

>Glyma12g18490.1 
          Length = 369

 Score =  142 bits (359), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 67/72 (93%)

Query: 1  MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
          MGRPPSNGGPAFRFTQ EVAEMEAILQEHNNAMP+RDVL  LAEKFSES DRKGKI VQM
Sbjct: 1  MGRPPSNGGPAFRFTQPEVAEMEAILQEHNNAMPSRDVLTTLAEKFSESQDRKGKIAVQM 60

Query: 61 KQVWNWFQNKRY 72
          KQVWNWFQNKRY
Sbjct: 61 KQVWNWFQNKRY 72


>Glyma06g35560.1 
          Length = 295

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/72 (90%), Positives = 68/72 (94%)

Query: 1  MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
          MGRPPSNGGPAFRFTQ EV+EMEAILQEHNNAMP+RDVL  LAEKFSES DRKGKI+VQM
Sbjct: 1  MGRPPSNGGPAFRFTQPEVSEMEAILQEHNNAMPSRDVLTALAEKFSESQDRKGKISVQM 60

Query: 61 KQVWNWFQNKRY 72
          KQVWNWFQNKRY
Sbjct: 61 KQVWNWFQNKRY 72