Miyakogusa Predicted Gene

Lj5g3v0659640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0659640.1 Non Chatacterized Hit- tr|B9RDU6|B9RDU6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,48.45,9e-18,ARID/BRIGHT DNA binding domain,NULL; BRIGHT, ARID
(A/T-rich interaction domain) d,ARID/BRIGHT DNA-bi,CUFF.53655.1
         (175 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g07530.1                                                       104   4e-23
Glyma09g39360.1                                                        74   6e-14
Glyma18g46950.1                                                        74   7e-14

>Glyma07g07530.1 
          Length = 593

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 68/110 (61%)

Query: 15  DSRDIVEILYDKAQCKFENFLIHFLRAIXXXXXXXXXXXXXXXXKKVDLCKLFLVVKGKG 74
           DS  IV    D +Q +FE  +  F   I                K VDL KLFLVV+GKG
Sbjct: 15  DSGSIVGCSNDGSQRRFEELVSEFTSEICGSDYFLPFPPMLGDGKPVDLYKLFLVVRGKG 74

Query: 75  GYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKNVDRK 124
           GYDAVCN KLW++ GEESG G SVGS+VKL Y KYLSALDAW++K  + K
Sbjct: 75  GYDAVCNCKLWDIVGEESGLGVSVGSSVKLVYSKYLSALDAWLKKVAESK 124


>Glyma09g39360.1 
          Length = 543

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 61  VDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKN 120
           +DL KLF+VVK KGGYDAVC  KLW+L GEE G G  VGS+V+L Y K+LS+L+A + KN
Sbjct: 8   LDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSVELAYSKHLSSLEACL-KN 66

Query: 121 V 121
           V
Sbjct: 67  V 67


>Glyma18g46950.1 
          Length = 526

 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 46/62 (74%)

Query: 61  VDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKN 120
           +DL KLF+VVK KGGYDAVC  KLW+L GEE G G  VGS+ +L Y K+LS+L+A ++  
Sbjct: 9   LDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSAELVYSKHLSSLEACLKNA 68

Query: 121 VD 122
            D
Sbjct: 69  TD 70