Miyakogusa Predicted Gene

Lj5g3v0626530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0626530.1 Non Chatacterized Hit- tr|I3SF84|I3SF84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.73,3.99931e-42,no description,NULL; Sm-like
ribonucleoproteins,Like-Sm (LSM) domain; LSM,Ribonucleoprotein LSM
doma,CUFF.53550.1
         (88 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g16410.1                                                       178   1e-45
Glyma04g38600.1                                                       178   1e-45
Glyma13g01320.1                                                       177   2e-45
Glyma17g07460.1                                                       176   7e-45
Glyma03g14140.1                                                        84   4e-17
Glyma14g11580.1                                                        70   6e-13
Glyma05g18620.1                                                        56   1e-08
Glyma05g25800.2                                                        47   3e-06
Glyma05g25800.1                                                        47   3e-06

>Glyma06g16410.1 
          Length = 88

 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          NVKKKSRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma04g38600.1 
          Length = 88

 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          NVKKKSRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma13g01320.1 
          Length = 88

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          N+KKKSRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma17g07460.1 
          Length = 88

 Score =  176 bits (445), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 88/88 (100%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          ++KKKSRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma03g14140.1 
          Length = 42

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/42 (95%), Positives = 42/42 (100%)

Query: 45 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNT 86
          GFDEYMNLVLDDA+EVN+KKKSRKTLGRILLKGDNITLMMNT
Sbjct: 1  GFDEYMNLVLDDAKEVNIKKKSRKTLGRILLKGDNITLMMNT 42


>Glyma14g11580.1 
          Length = 37

 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/37 (94%), Positives = 36/37 (97%)

Query: 50 MNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNT 86
          MNLVLDDAEEVN+KKKSRKTLGRILLK DNITLMMNT
Sbjct: 1  MNLVLDDAEEVNIKKKSRKTLGRILLKRDNITLMMNT 37


>Glyma05g18620.1 
          Length = 51

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 27/29 (93%)

Query: 45 GFDEYMNLVLDDAEEVNVKKKSRKTLGRI 73
          GFDEYMNLVLDDAEEVN+KKKSRKTL  +
Sbjct: 1  GFDEYMNLVLDDAEEVNIKKKSRKTLAML 29


>Glyma05g25800.2 
          Length = 87

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
          P  LI R + SK    IW+  + D  + G + GFD Y N+VL+D  E  +  + R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKL 65

Query: 71 GRILLKGDNITLMMNTGK 88
           +ILL G+NI +++  G 
Sbjct: 66 DQILLNGNNIAILVPGGS 83


>Glyma05g25800.1 
          Length = 87

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
          P  LI R + SK    IW+  + D  + G + GFD Y N+VL+D  E  +  + R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKL 65

Query: 71 GRILLKGDNITLMMNTGK 88
           +ILL G+NI +++  G 
Sbjct: 66 DQILLNGNNIAILVPGGS 83