Miyakogusa Predicted Gene
- Lj5g3v0612080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0612080.1 Non Chatacterized Hit- tr|F1S0W9|F1S0W9_PIG
Uncharacterized protein OS=Sus scrofa GN=NUP214 PE=4
SV=,26.63,4e-16,Nucleoporin domain,NULL; coiled-coil,NULL; seg,NULL;
SUBFAMILY NOT NAMED,NULL; NUCLEAR PORE COMPLEX ,CUFF.53369.1
(1728 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma18g01060.1 813 0.0
Glyma18g01070.1 536 e-152
Glyma06g36380.1 400 e-110
Glyma06g36430.1 300 7e-81
Glyma06g36420.1 163 1e-39
Glyma12g28030.1 159 2e-38
Glyma12g27810.1 87 1e-16
>Glyma18g01060.1
Length = 716
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/763 (58%), Positives = 520/763 (68%), Gaps = 61/763 (7%)
Query: 7 EELEGEGFPTSDYFFKSIGDPVPLKSNDYSFDPETLPSHPLALSERFRLTFVAHSSGFFV 66
EE+EGE TSDYFF +G+ +PLKS+D FD ETLPS PLALSERFRLTFVAHSSGFFV
Sbjct: 10 EEVEGEMISTSDYFFVKVGEALPLKSSDSVFDAETLPSQPLALSERFRLTFVAHSSGFFV 69
Query: 67 AKTKDLIDSAKEFKDKGSGSPVQQLSLVDVSIGRVRILALSTDNLTLAASVSGDIRFYSV 126
AKTKDLIDSAKE KDKGSGSPV+QLSLVDV +GRVR LALSTDN TLAASVSGDIRFYSV
Sbjct: 70 AKTKDLIDSAKELKDKGSGSPVEQLSLVDVPVGRVRALALSTDNSTLAASVSGDIRFYSV 129
Query: 127 RDFVNKEVKQSFSCSLNNSTFVKDMRWITTSENSYVVLSNTGALYHGEPGFPLKLVMENV 186
F+NKEVKQSFSCSLN+STFVKDMRWITT ++ YVVLSN G LY+G+ GFPLK VM+NV
Sbjct: 130 ESFLNKEVKQSFSCSLNDSTFVKDMRWITTPKHCYVVLSNIGKLYYGDIGFPLKHVMDNV 189
Query: 187 DAVDWGVKGRFVVVARKNALSILSTKFEERVSISLPFESWISDYADNVSIKVDSIKCVRP 246
DAVDWG+KG FV VA K+ LSILSTKFEERVSISL F SWI D++ + SIKVDS+KCVRP
Sbjct: 190 DAVDWGLKGSFVAVASKSVLSILSTKFEERVSISLSFRSWIGDFSADGSIKVDSVKCVRP 249
Query: 247 DSIIIGCFQLTEDGKEENYLIQVIRSRLGEIADGCSELVVRSFYEIYPCLTDDIVPIGTG 306
DSI+IGC QLTEDGKEENY+IQVIRS+LGEI DGCSELVV+SF +IY L DDIVP G+G
Sbjct: 250 DSIVIGCVQLTEDGKEENYVIQVIRSQLGEINDGCSELVVQSFCDIYQGLIDDIVPFGSG 309
Query: 307 PYLLLTYLEQCQLAINANVKNTDDHIVLLGWSIDGDKSEAAVGYITEDKYIPRIXXXXXX 366
PYLLL YL+QCQLAINAN+KNTD HI+LLGWS D DKSEA V I + PRI
Sbjct: 310 PYLLLAYLKQCQLAINANMKNTDQHIMLLGWSADEDKSEAVVIDIERENCAPRIELQENG 369
Query: 367 XXXXXXXXCIDNVSIYDKVEIQLGGEERNELSPYCVLLCLTLEGKLVMFHVASLAGSKVS 426
CIDNVSIY KV +Q+ EER EL P+CVL+CLTLEGKLVMFHVAS S
Sbjct: 370 DDNLLLGLCIDNVSIYQKVGVQIDVEERTELLPHCVLICLTLEGKLVMFHVASFICLIAS 429
Query: 427 PEFDSTVHDEEDAFVRPPVDESSTSHGLQKKTQELD----KAVEVIENLKSKPHANPNQI 482
D + + + + + LQ T + + EV NL +KP NP QI
Sbjct: 430 ---DKNISCFLAIWCNRVILLNIDCYCLQLMTFPIKTNYVQTFEVSGNLTAKPSGNPQQI 486
Query: 483 TQTEDYSKYLEVESVKNVQSLNSDNQNPCPPGEQQKNVGQKTAALGTSTGSFIASRNSAA 542
T+T+ + Y EVE V N +S EQQKN+GQKTA LGTS G + + +S +
Sbjct: 487 TRTD--TNYPEVELVGNSES------------EQQKNLGQKTATLGTSIGPLMVNSHSVS 532
Query: 543 HGLPSYNLQETTEMTTGLWNKNSSQGSHRVSHPLPGETFSFPKXXXXXXXXXXXXXXXXX 602
GL SYN ++T T LW NSS+ S R S LP +++
Sbjct: 533 SGLSSYNNLQSTTKTRELWTANSSRDSQRAS--LPASSYA----------------DGVG 574
Query: 603 YQSKKYPMGATNVLDSTGREPFNVRDVSGVSPAINSTSRLXXXXXXXXXXXXXNIQPVVG 662
+Q+KKY MGATNV S G +P V+DV+ VSPAI+S N+QP++
Sbjct: 575 FQNKKYTMGATNVPGSMGGKPVLVQDVNDVSPAIDSA-------------RAGNMQPILN 621
Query: 663 GNSPXXXXXXXXXXXXXXXXXXXXXXQKF-PPNEQRVTSFKLPASSSDFSKQFGNINEMT 721
+S +KF P NEQ T KL SSD SKQFGNINEMT
Sbjct: 622 SSS--------HFSSDGNTAAIKSSARKFLPSNEQHGTPSKLGIFSSDLSKQFGNINEMT 673
Query: 722 KELDLLLKSIEETGGFRDACTRSLHSSVGEVEQSMDTISKQCK 764
KELDLLLKSIEE GGFRDACTRSL SS+ VEQ MD +SK+CK
Sbjct: 674 KELDLLLKSIEEAGGFRDACTRSLRSSIEAVEQGMDALSKKCK 716
>Glyma18g01070.1
Length = 815
Score = 536 bits (1381), Expect = e-152, Method: Compositional matrix adjust.
Identities = 357/699 (51%), Positives = 406/699 (58%), Gaps = 51/699 (7%)
Query: 887 SQLVAAENLSECLSKQIAALSLRSASEDQKNVKELFETIGIPYDASFGSPDIKGFMKTPP 946
SQLVAAENLSECLSKQ+ ALSL+S +E++KNVKELFETIGIPY+A+FGSPD+KGFMKTPP
Sbjct: 1 SQLVAAENLSECLSKQMEALSLKSQTEERKNVKELFETIGIPYEAAFGSPDMKGFMKTPP 60
Query: 947 SKKLLFPDLTINKNQSMRVQASAMKSCEPETSXXXXDSLDQSLTCFEPPKTIIKRMLLQD 1006
SKK LF DLT NK+QS R QASAMK EPET+ DSLDQS TCFEPPKTI+KRMLLQ+
Sbjct: 61 SKKTLFSDLTANKDQSRRNQASAMKCFEPETARRRRDSLDQSWTCFEPPKTIVKRMLLQE 120
Query: 1007 LQKPKSNESFISMNKEKVKISMLEESAPRQGDARIPSSVFPASKMKASILDSHLQFEEVS 1066
LQK NES SMNK+K K+S LEES+P DARIPS VFPAS +K +L
Sbjct: 121 LQKVNRNESLFSMNKDK-KVSTLEESSPCHIDARIPSIVFPASNIKGKLL---------- 169
Query: 1067 EHSKVQPKADNLQAPTQVSDSKSRVLQRSNISAVPSQPAFQLSTAMMHGHGTETKDLAAE 1126
+ V SKS VLQ++NI +PSQPAF+LS M+ GH TETKDLAAE
Sbjct: 170 ---------------SVVDLSKSSVLQKNNILTIPSQPAFRLSPTMVRGHSTETKDLAAE 214
Query: 1127 KSNVFQKFDLTSKTESKSILNTKLPQKXXXXXXXXXXXPLSMFKSSEFMPNTNSKMTMAS 1186
KS V QKFDL S +E+K L K+PQ P KSSE MP NSKMTMA+
Sbjct: 215 KSTV-QKFDLISNSENKPTLLWKMPQNPSIPTYSTTETPSMKIKSSE-MPFPNSKMTMAT 272
Query: 1187 SSTMGDKLSGAFNPESRRKDVPSLESQSFTVSAASTLFGKGNDFDADKNRLKENSPAVPS 1246
SST GDKLS +F PES K PS S T+SA ST GK +F DK+ KEN AVP+
Sbjct: 273 SSTTGDKLSSSFTPESWGKGFPSSGSHLSTISAPSTFLGKVTEFHVDKSLPKENISAVPT 332
Query: 1247 FGSSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHIISTSS 1306
FG S + N ++S+SS
Sbjct: 333 FGGSFK-------SLLFPTIKTSPSPSSSSVSSAAVSVASSSLTSSNTSTDSNRVMSSSS 385
Query: 1307 ASDFHYLSNQDPKXXXXXXXXXXXXXXXXTSAKSDTQPA----------GVSNLKTD-DA 1355
S +LSNQ PK S KS+ PA VSN KT DA
Sbjct: 386 TSASLHLSNQAPKDTVPSIPNPPGLKLTLESLKSEIPPAAALKSDMQPAAVSNSKTVLDA 445
Query: 1356 ASEAVSHLNEPLNSESELKLGSSRTFNPTTEQPSNNITSSELKVVSVSQSEQPSGAPVQL 1415
++E V+ NEPLN SELKLG SR F+PT EQPSNN TS L VVSVSQ+ QPS AP+QL
Sbjct: 446 SAEVVTRPNEPLNGASELKLGPSRNFSPTIEQPSNNTTSFGLNVVSVSQAAQPSDAPLQL 505
Query: 1416 STSFIXXXXXXXXKNEGFDVGIXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXPNQSF 1474
STSF+ KNEG D GI PN S
Sbjct: 506 STSFLSSASVSNRKNEGLDFGISHEDEMEEEAPETSNNTTELSLGSFGGFGISSSPNPSM 565
Query: 1475 SKSNPFGVSFNNAS----SSAITFSVPSGELFRXXXXXXXXXXXXXXXXXTNSGAFSGSF 1530
K+NPFG SFNN + SS +TFSVPSGELF+ T SGAFSG F
Sbjct: 566 PKTNPFGGSFNNVATSLPSSTVTFSVPSGELFKPASFNFSSPQSSSPTQTTISGAFSGGF 625
Query: 1531 NTGAAVPTQAPSAFGQPAQIGSGQQVLGSVLGTFGQSRQ 1569
N AAVP QAP FGQPAQIGSGQQVLGSVLG FGQSRQ
Sbjct: 626 NAVAAVPAQAPGGFGQPAQIGSGQQVLGSVLGGFGQSRQ 664
>Glyma06g36380.1
Length = 487
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/529 (48%), Positives = 297/529 (56%), Gaps = 85/529 (16%)
Query: 281 CSELVVRSFYEIYPCLTDDIVPIGTGPYLLLTYLEQCQLAINANVKNTDDHIVLLGWSID 340
CSELVV+SF +IY L DDIVP G+GPYLLL YL+QCQLAINAN+KNTD HI+LLGWS D
Sbjct: 2 CSELVVQSFCDIYQGLIDDIVPFGSGPYLLLAYLKQCQLAINANMKNTDQHIMLLGWSAD 61
Query: 341 GDKSEAAVGYITEDKYIPRIXXXXXXXXXXXXXXCIDNVSIYDKVEIQLGGEERNELSPY 400
DKSEA V I + +PRI CIDNVSIY KV +Q+ EER EL P+
Sbjct: 62 EDKSEAVVIDIERENCVPRIELQENGDDNLLLGLCIDNVSIYQKVGVQIDVEERTELLPH 121
Query: 401 CVLLCLTLEGKLVMFHVAS-------------------LAGSKVSPEFDSTVHDEEDAFV 441
CVL+CLTLEGKLVMFHVAS LAG K SPE DS +H++ED V
Sbjct: 122 CVLICLTLEGKLVMFHVASFICLIASDKNISCVLAIWCLAGCKTSPEIDSVLHNDEDTSV 181
Query: 442 RPPVDESST-SHGLQKKTQELDKAVEVIENLKSKPHANPNQITQTEDYSKYL-----EVE 495
DE T GLQK QE DK + L + P QT + S L EVE
Sbjct: 182 NLHEDEGCTLPQGLQK--QESDKGYSICLQLMTFPI--KTNYVQTFEVSGNLTAKPSEVE 237
Query: 496 SVKNVQSL---------------NSDNQNPCPPGEQQKNVGQKTAALGTSTGSFIASRNS 540
V N +SL N+ NQNP PGEQQKN+GQKTA LGTS GS + + +S
Sbjct: 238 LVGNSESLKSNVQQVVPDVDAIQNTGNQNPFLPGEQQKNLGQKTATLGTSIGSLMVNSHS 297
Query: 541 AAHGLPSY-NLQETTEMTTGLWNKNSSQGSHRVSHPLPGETFSFPKXXXXXXXXXXXXXX 599
+ GL SY NLQ TTE T LW NSS+ S R S LP +++
Sbjct: 298 VSSGLSSYNNLQSTTEKTRELWTANSSRDSQRAS--LPASSYA----------------D 339
Query: 600 XXXYQSKKYPMGATNVLDSTGREPFNVRDVSGVSPAINSTSRLXXXXXXXXXXXXXNIQP 659
+Q+KKY MGATN DV+ VSPAI+S SRL N+QP
Sbjct: 340 GVGFQNKKYTMGATN-------------DVNDVSPAIDSASRLVQSGGQLSTLVAGNMQP 386
Query: 660 VVGGNSPXXXXXXXXXXXXXXXXXXXXXXQKF-PPNEQRVTSFKLPASSSDFSKQFGNIN 718
++ +S +KF P NEQ T KL SD SKQFGNIN
Sbjct: 387 ILNSSS--------RFSSDGNIAAVKSSARKFLPSNEQHGTPSKLGIFGSDLSKQFGNIN 438
Query: 719 EMTKELDLLLKSIEETGGFRDACTRSLHSSVGEVEQSMDTISKQCKIWT 767
EMTKELDLLLKS+EETGGFRDACTRSL SS+ VEQ MD +SK+CKI T
Sbjct: 439 EMTKELDLLLKSVEETGGFRDACTRSLRSSIEAVEQGMDALSKKCKILT 487
>Glyma06g36430.1
Length = 630
Score = 300 bits (769), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 224/500 (44%), Positives = 253/500 (50%), Gaps = 39/500 (7%)
Query: 1075 ADNLQAPTQVSDSKSRVLQRSNISAVPSQPAFQLSTAMMHGHGTETKDLAAEKSNVFQKF 1134
AD+L+APT V +SKS VLQ++NI +PSQPAF LS M+ GH TETKDLAAEKS V QKF
Sbjct: 3 ADSLRAPTHVLESKSSVLQKNNILTIPSQPAFHLSPTMVRGHSTETKDLAAEKSTV-QKF 61
Query: 1135 DLTSKTESKSILNTKLPQKXXXXXXXXXXXPLSMFKSSEFMPNTNSKMTMASSSTMGDKL 1194
DL S +E+K L KLPQ P KSSE MP NSKMTMASSST GDKL
Sbjct: 62 DLISNSENKPTLLWKLPQNPSIPTYSTTETPSMKIKSSE-MPFPNSKMTMASSSTTGDKL 120
Query: 1195 SGAFNPESRRKDVPSLESQSFTVSAASTLFGKGNDFDADKNRLKENSPAVPSFGSSREXX 1254
S +F PES KD PS S T+SA ST GK +F DK+ KEN PAVP+FG S +
Sbjct: 121 SSSFTPESWGKDFPSSGSHLSTISAPSTFLGKVTEFHVDKSLPKENIPAVPTFGGSFK-- 178
Query: 1255 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHIISTSSASDFHYLS 1314
N ++S+SS S F +LS
Sbjct: 179 -----SLSFPTIKTSPSPSSSSVSSAAVSVASSSLTSSNTSTDSNRVMSSSSTSAFLHLS 233
Query: 1315 NQDPKXXXXXXXXXXXXXXXXTSAKSDTQPAGVSNLKTDDAASEAVSHLNEPLNSESELK 1374
NQ PK S KS+ PA LK+D +
Sbjct: 234 NQAPKDTVPSLPNPPGLKLTLESLKSEIPPAAA--LKSDMQPAAV--------------- 276
Query: 1375 LGSSRTFNPTTEQPSNNITSSELKVVSVSQSEQPSGAPVQLSTSFIXXXXXXXXKNEGFD 1434
PT EQP NN TSS+L VVSVSQ+ QPS A +QLSTSF+ KNEG D
Sbjct: 277 --------PTIEQPFNNTTSSDLNVVSVSQAAQPSDASLQLSTSFLSSASVSNGKNEGLD 328
Query: 1435 VGIXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXPNQSFSKSNPFGVSFNNA----SS 1489
GI PN S K+NPFG SFNN SS
Sbjct: 329 FGISHEDEMEEEAPETSNNTTELSLGSFGGFGISSSPNPSMPKTNPFGGSFNNVGTSLSS 388
Query: 1490 SAITFSVPSGELFRXXXXXXXXXXXXXXXXXTNSGAFSGSFNTGAAVPTQAPSAFGQPAQ 1549
S +TFSVPSGELF+ TNSGAFSG FN AAVP QAP FGQPAQ
Sbjct: 389 STVTFSVPSGELFKPASFNFSSPQSSSPTQTTNSGAFSGGFNAVAAVPAQAPGGFGQPAQ 448
Query: 1550 IGSGQQVLGSVLGTFGQSRQ 1569
IGSGQQVLGSVLG FGQSRQ
Sbjct: 449 IGSGQQVLGSVLGGFGQSRQ 468
>Glyma06g36420.1
Length = 103
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/103 (76%), Positives = 90/103 (87%)
Query: 885 IGSQLVAAENLSECLSKQIAALSLRSASEDQKNVKELFETIGIPYDASFGSPDIKGFMKT 944
+ SQLVAAENLSECLSKQ+ ALSL+S +E++KNVKELFETIGIPY+A+FGSPD+KGFMKT
Sbjct: 1 VSSQLVAAENLSECLSKQMEALSLKSQTEERKNVKELFETIGIPYEAAFGSPDMKGFMKT 60
Query: 945 PPSKKLLFPDLTINKNQSMRVQASAMKSCEPETSXXXXDSLDQ 987
PPSKK LF DLT NK+QS R QASAMKS EPET+ DSLDQ
Sbjct: 61 PPSKKTLFSDLTANKDQSRRNQASAMKSFEPETARRRRDSLDQ 103
>Glyma12g28030.1
Length = 462
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 1300 HIISTSSASDFHYLSNQDPKXXXXXXXXXXXXXXXXTSAKSDTQPAGVSNLKTDDAASEA 1359
H+ S+S S F +LSNQ PK + DA++E
Sbjct: 94 HVTSSSLTSVFLHLSNQAPK-----------------------------DRTVLDASAEV 124
Query: 1360 VSHLNEPLNSESELKLGSSRTFNPTTEQPSNNITSSELKVVSVSQSEQPSGAPVQLSTSF 1419
V+ NEP N SELKLG SR F T EQPSN+ TSS+L +V VSQ QPS AP+Q STSF
Sbjct: 125 VTRPNEPSNGSSELKLGPSRNFGATIEQPSNS-TSSDLNIVLVSQVAQPSDAPLQFSTSF 183
Query: 1420 IXXXXXXXXKNEGFDVGIXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXPNQSFSKSN 1478
+ KNEG DVGI PN S K+N
Sbjct: 184 LSFASVSNGKNEGLDVGISREDEMEEEAPETSNNTTELSLGSFGGFAINSSPNPSMPKTN 243
Query: 1479 PFGVSFNNASSSAITFSVPSGELFRXXXXXXXXXXXXXXXXXTNSGAFSGSFNTGAAVPT 1538
PFG SFNN L TNSGAFSG FN AAVP
Sbjct: 244 PFGGSFNN--------------LATSLSSSTVTFSSSSPTQTTNSGAFSGGFNVVAAVPA 289
Query: 1539 QAPSAFGQPAQIGSGQQVLGSVLGTFGQSRQ 1569
QAPS FGQP QIGSGQQ+LGSVL FGQSRQ
Sbjct: 290 QAPSGFGQPTQIGSGQQILGSVLDGFGQSRQ 320
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 921 LFETIGIPYDASFGSPDIKGFMKTPPSKKLLFPDLTINKNQSMRVQASAMKSCEPETSXX 980
LFETIGIPY+A+FGSPD+KGFMKTPPS K+LF DLT NK+QS R QA+AMKSCEPET+
Sbjct: 1 LFETIGIPYEAAFGSPDMKGFMKTPPS-KILFADLTANKDQSRRNQANAMKSCEPETARR 59
Query: 981 XXDSLDQ 987
DSLDQ
Sbjct: 60 RRDSLDQ 66
>Glyma12g27810.1
Length = 181
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/47 (82%), Positives = 41/47 (87%)
Query: 375 CIDNVSIYDKVEIQLGGEERNELSPYCVLLCLTLEGKLVMFHVASLA 421
CIDNVSIY KV +QLG EER E SPYCVL+CLTLEGKLVMFHVASL
Sbjct: 30 CIDNVSIYQKVGVQLGVEERTERSPYCVLMCLTLEGKLVMFHVASLG 76
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 520 VGQKTAALGTSTGSFIASRNSAAHGLPSYN-LQETTEMTTGLWNKNSSQGSHRVSHPLPG 578
+GQKTA LGTS GS + + A+ L SYN LQ TTE T LW N S+ S R S+ LPG
Sbjct: 75 LGQKTATLGTSIGSLTVNNHFASSSLSSYNNLQATTEKTRELWTSNGSRDSQRASNLLPG 134
Query: 579 ETFSFPK 585
ETFSFPK
Sbjct: 135 ETFSFPK 141