Miyakogusa Predicted Gene

Lj5g3v0611970.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0611970.2 Non Chatacterized Hit- tr|K4BA61|K4BA61_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,62.13,0,Prokaryotic type I DNA topoisomerase,DNA topoisomerase,
type IA, core domain; no description,Toprim ,CUFF.53333.2
         (1048 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g18340.1                                                       701   0.0  
Glyma17g29030.1                                                       694   0.0  
Glyma14g18360.1                                                       217   5e-56
Glyma17g28990.1                                                       110   9e-24
Glyma17g28980.1                                                        94   7e-19
Glyma06g16200.1                                                        80   1e-14

>Glyma14g18340.1 
          Length = 415

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/415 (80%), Positives = 361/415 (86%), Gaps = 5/415 (1%)

Query: 231 PLYPPLGXXXXXXXXXXXXXXIQKYLGDTYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 290
           PLYPP                I++YLGD YEVLPSYGHVRDLAARSGSVRPDDDFSMVWE
Sbjct: 1   PLYPPTRKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 60

Query: 291 VPSAGWTHLKSFKVALSGAEVFILASDPDREGEAIAWHILEMLQQQGALHDNISVARVVF 350
           VP   WTHLKS KVALS AE  ILASDPDREGEAIAWHI+EMLQQQGALHDNIS+ARVVF
Sbjct: 61  VPPPAWTHLKSIKVALSRAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLARVVF 120

Query: 351 HEITEQSIKGALQAPREIDVNLVHAYLARRALDYLIGFNISPLLWKKLPGCQSAGRVQSA 410
           HEITE+SIKGALQ PREIDVNLV AYLARRALDYLIGFNISPLLW+KLPGCQSAGRVQSA
Sbjct: 121 HEITEKSIKGALQTPREIDVNLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSA 180

Query: 411 ALSLICDREMEIDKFKPQEYWTVEAQLRKKELISNRNLTFSGHLTCFDSKKLTQFSITSD 470
           ALSLICDREMEID+FKP+EYWTVE Q++KKEL SN+NLTF  HLT FDSKKL +FSITSD
Sbjct: 181 ALSLICDREMEIDEFKPKEYWTVEVQMKKKELRSNKNLTFPAHLTHFDSKKLNKFSITSD 240

Query: 471 TEARDIESKLKSTDFKVISLKRNKVRRNPPTPYITSTLQQDAANKLHFTASHTMK----- 525
           TEARDI S + S DF V+SLK+NK RRNPPTPYITSTLQQDAANKLHFTA+   K     
Sbjct: 241 TEARDIRSNINSADFHVVSLKKNKSRRNPPTPYITSTLQQDAANKLHFTATVMNKICLSC 300

Query: 526 LAQKLYEGVELADGVAEGLITYIRTDGFHISDGAVANIRSLIIERYGQNFAARSPPKYFK 585
           LAQKLYEGVEL+D VA GLITYIRTDG HISD AVA+IRSLIIERYGQ+F ++S PKY+K
Sbjct: 301 LAQKLYEGVELSDSVAVGLITYIRTDGLHISDEAVASIRSLIIERYGQDFVSQSAPKYYK 360

Query: 586 KVKNAQEAHEAIRPTDIHKLPSMLAGVLDEESLKLYTLIWSRTVSCQMEPAIFEQ 640
           KVKNAQEAHEAIRPTDI KLPSML+ +LDEESLKLYTLIWSRTVSCQMEPA+FEQ
Sbjct: 361 KVKNAQEAHEAIRPTDIRKLPSMLSAILDEESLKLYTLIWSRTVSCQMEPAVFEQ 415


>Glyma17g29030.1 
          Length = 495

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/385 (85%), Positives = 356/385 (92%)

Query: 260 YEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAGWTHLKSFKVALSGAEVFILASDPD 319
           YEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS  WTHLKS KVALSGAE  ILASDPD
Sbjct: 2   YEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVALSGAENLILASDPD 61

Query: 320 REGEAIAWHILEMLQQQGALHDNISVARVVFHEITEQSIKGALQAPREIDVNLVHAYLAR 379
           REGEAIAWHI+EMLQQQGALHDNIS+ARVVFHEITE+SIKG+LQ PREID+NLV AYLAR
Sbjct: 62  REGEAIAWHIIEMLQQQGALHDNISLARVVFHEITEKSIKGSLQTPREIDINLVQAYLAR 121

Query: 380 RALDYLIGFNISPLLWKKLPGCQSAGRVQSAALSLICDREMEIDKFKPQEYWTVEAQLRK 439
           RALDYLIGF+ISPLLW+KLPGCQSAGRVQSAALSLICDREMEID+FKP+EYW VE QL+K
Sbjct: 122 RALDYLIGFSISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWIVEVQLKK 181

Query: 440 KELISNRNLTFSGHLTCFDSKKLTQFSITSDTEARDIESKLKSTDFKVISLKRNKVRRNP 499
           KEL SN+NLTF  HLT FDSKKL QFSITSDTEARDI+S + S DF V+SLK++K RRNP
Sbjct: 182 KELRSNKNLTFPAHLTHFDSKKLNQFSITSDTEARDIQSTINSADFHVVSLKKSKSRRNP 241

Query: 500 PTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVELADGVAEGLITYIRTDGFHISDGA 559
           PTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVEL+DG+A GLITYIRTDG HISD  
Sbjct: 242 PTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVELSDGIAVGLITYIRTDGLHISDEV 301

Query: 560 VANIRSLIIERYGQNFAARSPPKYFKKVKNAQEAHEAIRPTDIHKLPSMLAGVLDEESLK 619
           VA+IRSLIIERYGQ+F ++S PKY+KKVKNAQEAHEAIRPTDI KLPSML+G+LD ESLK
Sbjct: 302 VASIRSLIIERYGQDFVSQSAPKYYKKVKNAQEAHEAIRPTDICKLPSMLSGILDGESLK 361

Query: 620 LYTLIWSRTVSCQMEPAIFEQVQLD 644
           LYTLIWSRTVSCQM PA+FEQV ++
Sbjct: 362 LYTLIWSRTVSCQMGPAVFEQVTVE 386


>Glyma14g18360.1 
          Length = 346

 Score =  217 bits (553), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 130/187 (69%), Gaps = 22/187 (11%)

Query: 883  CKYIAKTLYGVEEDEDAPQPNTTIEEPKVLGVISGSNEKVLFKSGPYGCYVQLGEDRKGY 942
            C+YIAKTLYG EE+EDA QPNT IEEPK+LGV SGSNEKVL KSGPYG YVQLGEDRKGY
Sbjct: 160  CRYIAKTLYGTEEEEDASQPNTRIEEPKLLGVTSGSNEKVLLKSGPYGVYVQLGEDRKGY 219

Query: 943  APKRASVPSFMNANNITLEDGLELLRYPLTL----------------------GKHPKDG 980
             P+RASV    + ++ITL+D LE+L+YPLTL                      G HPKDG
Sbjct: 220  IPRRASVSHIKDVDSITLKDALEVLQYPLTLPHPLVQIANQPCSIALFLQPLPGNHPKDG 279

Query: 981  RPVILRLSQGGFTVKHRSKSFHVPKDMNPRDVTFEKALKFLLGDNVTNTGRPKSKPKVEE 1040
            +PVILRL++ GF V+HR     +PK++ P DVT EKAL++L GD+V  +GRPK      E
Sbjct: 280  QPVILRLARAGFCVRHRRTIASIPKNVKPSDVTLEKALEYLSGDDVRRSGRPKKGKSKVE 339

Query: 1041 DEAVEAF 1047
             E +EAF
Sbjct: 340  VEVIEAF 346


>Glyma17g28990.1 
          Length = 52

 Score =  110 bits (275), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/51 (94%), Positives = 48/51 (94%)

Query: 831 VEKMLEKKFGQYLFASLRDQKRVCPSCMEGTLIFKVSRFGAGYFIGCDQHP 881
           VEKMLEKKFG YLFASL DQ RVCPSCMEGTLIFKVSRFGAGYFIGCDQHP
Sbjct: 1   VEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHP 51


>Glyma17g28980.1 
          Length = 75

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 56/75 (74%)

Query: 973  LGKHPKDGRPVILRLSQGGFTVKHRSKSFHVPKDMNPRDVTFEKALKFLLGDNVTNTGRP 1032
            +G HPKDG+PVIL+L++ G  V+HR     VPK++ P DVT EKAL++L GD+V  +GRP
Sbjct: 1    MGNHPKDGQPVILKLARAGLCVRHRRTVASVPKNVKPSDVTLEKALEYLSGDDVRRSGRP 60

Query: 1033 KSKPKVEEDEAVEAF 1047
            K K KV+E E +EAF
Sbjct: 61   KGKSKVQEVEVIEAF 75


>Glyma06g16200.1 
          Length = 603

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 201/479 (41%), Gaps = 85/479 (17%)

Query: 309 AEVFILASDPDREGEAIAWHILEMLQQQGALHDNISVARVVFHEITEQSIKGALQAP-RE 367
            +  IL  D D EGE IA+ ++++     A++ ++++ R  F  + ++ I  A Q   R+
Sbjct: 108 CQWLILWLDCDVEGENIAYEVIDVCT---AVNPHLTIKRAWFSTLIDRDIHNAAQNDLRD 164

Query: 368 IDVNLVHAYLARRALDYLIGFNIS---PLLWKKLPGCQSA----------GRVQSAALSL 414
            D  +  A   R+ +D  IG + +    +L K      +A          G  Q   L  
Sbjct: 165 PDKRVADAVDVRQEIDLRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGF 224

Query: 415 ICDREMEIDKFKPQEYWTVEAQLRKKELISNRNLTFSGHLTCFDSKKLTQFSITSDTEAR 474
           + +R  EI   +P+E+W++      KE  +     FS     +   +L  ++        
Sbjct: 225 VVERFWEIQAHEPEEFWSIICSHESKEGTAE----FS-----WMRGRLFDYTCAVIIYEM 275

Query: 475 DIESKLKSTDFKVISLKRNKVRRNPPTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGV 534
            +E    +   K            PP P  T  LQ+ A+     ++ HTMK+A++LY+  
Sbjct: 276 CVEEPTATEKPKY-----------PPFPLNTIELQKRASRYFRMSSDHTMKVAEELYQA- 323

Query: 535 ELADGVAEGLITYIRTDGFHISDGAVANIRSLIIERYGQN----FAARSPPKYFKKVKNA 590
                   G I+Y RT+    S G   ++ +++ E+ G      +A R         +N 
Sbjct: 324 --------GFISYPRTETDSFSPG--TDLHTIVQEQQGHPEWGIYAQRLMDPEAGLWRNP 373

Query: 591 Q------EAHEAIRPTDIHKLPSMLAGVLDEESLKLYTLIWSRTVSCQMEPAIFEQVQLD 644
           +      +AH  I PT   K  +  +G   ++  KLY L+    ++C  +PA+  +  ++
Sbjct: 374 RGGGHDDKAHPPIYPT---KFSTGESG-WSQDHRKLYELVVRHFLACVSKPALGAETTVE 429

Query: 645 IGNADMSIMLRSASSKVEFPGYRAAFEDIDMEVVQDKHNDRSYRDQAF--EVLNSIKTGD 702
           I   +++  L SA  +                V+ +K+    YR +++   ++ +   G 
Sbjct: 430 I---NIAGELFSACGR----------------VILEKNYLDVYRYESWGGSMIPTYTNGQ 470

Query: 703 LLHLVQAELNQHHTQPPPRYSEASLVKKL--EELGIGRPSTYASTIKVLKDRNYVTVKS 759
             +  +  L    T+PPP  SEA L+  +  EE  IG  +T    IK + DR+Y T  S
Sbjct: 471 QFNPTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKKMLDRSYATKDS 529