Miyakogusa Predicted Gene

Lj5g3v0575460.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0575460.4 Non Chatacterized Hit- tr|D8TNC6|D8TNC6_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,48.94,0.0000000000003, ,CUFF.53338.4
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g29660.1                                                       163   3e-41
Glyma17g29660.2                                                       134   3e-32
Glyma14g17100.1                                                        71   2e-13

>Glyma17g29660.1 
          Length = 235

 Score =  163 bits (413), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 84/91 (92%)

Query: 1   MIQVVEAPDIVRNKISFSAFGFLDGEVSLNGKLKALDTEWIQVVFEAPELKLGSWEVQYG 60
           M+QVVEAPDIVRNK+S S   FLD EVSL GKLKALD EWIQV+FEAPELK+GSW+VQYG
Sbjct: 144 MVQVVEAPDIVRNKVSLSVLSFLDVEVSLQGKLKALDGEWIQVIFEAPELKVGSWQVQYG 203

Query: 61  GQSEVKLRITYVDEKIRLGLGSRGSLFVFQR 91
           GQSEVKLRITYVDEKIRLGLGSRGSLFVFQR
Sbjct: 204 GQSEVKLRITYVDEKIRLGLGSRGSLFVFQR 234


>Glyma17g29660.2 
          Length = 231

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 69/76 (90%)

Query: 1   MIQVVEAPDIVRNKISFSAFGFLDGEVSLNGKLKALDTEWIQVVFEAPELKLGSWEVQYG 60
           M+QVVEAPDIVRNK+S S   FLD EVSL GKLKALD EWIQV+FEAPELK+GSW+VQYG
Sbjct: 144 MVQVVEAPDIVRNKVSLSVLSFLDVEVSLQGKLKALDGEWIQVIFEAPELKVGSWQVQYG 203

Query: 61  GQSEVKLRITYVDEKI 76
           GQSEVKLRITYVDEKI
Sbjct: 204 GQSEVKLRITYVDEKI 219


>Glyma14g17100.1 
          Length = 114

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 33/37 (89%)

Query: 55  WEVQYGGQSEVKLRITYVDEKIRLGLGSRGSLFVFQR 91
           W   YGGQSEVKLRITYVDEK RLGLGSRGSLFVFQR
Sbjct: 77  WIALYGGQSEVKLRITYVDEKFRLGLGSRGSLFVFQR 113