Miyakogusa Predicted Gene

Lj5g3v0523180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0523180.1 tr|B9MY55|B9MY55_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594536 PE=4
SV=1,50.93,0.000000000000009,PRA1,Prenylated rab acceptor
PRA1,gene.g59033.t1.1
         (123 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g48420.1                                                       135   1e-32
Glyma09g37980.1                                                       122   8e-29
Glyma18g48410.1                                                       110   2e-25

>Glyma18g48420.1 
          Length = 196

 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 88/121 (72%), Gaps = 4/121 (3%)

Query: 3   LIPRHKVSLILLVIMTYVTTLYCLVLRAYPNSVLLHRSVDKRFVFGLLVFATLVQLILTD 62
           LIP+ KVSLIL VIMTYVTTLY L+LRA+PNSV+LHR +DKR V  LL  AT VQLILT 
Sbjct: 80  LIPQRKVSLILFVIMTYVTTLYFLLLRAFPNSVVLHRIIDKRVVLALLAIATAVQLILTK 139

Query: 63  AGVYLAVSLACVVPLVLLHAVLWVSHHTFVETEDEDACCCAKQLVPLDGHNECRTDGIEN 122
           AG++LAV+LA  VP++L+HAVLW S+  F E ED  A     +L PL GH+E   D  + 
Sbjct: 140 AGIHLAVTLASSVPVLLVHAVLWASYDAF-EVEDSSA---KGELAPLAGHSESVADNSDA 195

Query: 123 V 123
           V
Sbjct: 196 V 196


>Glyma09g37980.1 
          Length = 230

 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/126 (53%), Positives = 83/126 (65%), Gaps = 20/126 (15%)

Query: 1   MILIPRHKVSLILLVIMTYVTTLYCLVLRAYPNSVLLHRSVDKRFVFGLLVFATLVQLIL 60
           ++LIP  K SLILLVIMTYV  LYCLVLRA+P SV LHR++DK+FV  LLVFAT VQLIL
Sbjct: 122 IVLIPHRKSSLILLVIMTYVIVLYCLVLRAHPKSVFLHRTIDKKFVLALLVFATFVQLIL 181

Query: 61  TDAGVYLAVSLACVVPLVLLHAVLWVSHHTFVETEDEDACCCAKQLVPLDGHNECR---T 117
           T+AG+ LAV+LAC VP +L+              +D D     K++ PL GHN C     
Sbjct: 182 TEAGIQLAVTLACAVPFLLIE-------------DDSD----TKEMAPLVGHNRCTCGAK 224

Query: 118 DGIENV 123
             +ENV
Sbjct: 225 GSLENV 230


>Glyma18g48410.1 
          Length = 206

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 65/77 (84%)

Query: 1   MILIPRHKVSLILLVIMTYVTTLYCLVLRAYPNSVLLHRSVDKRFVFGLLVFATLVQLIL 60
           ++LIP  K+SLI+LVIMTYV  +YCLVLRAYP S+ LHR++DK+FV  LLVFAT VQLIL
Sbjct: 130 IVLIPHRKLSLIILVIMTYVIVIYCLVLRAYPKSIFLHRTIDKKFVLALLVFATFVQLIL 189

Query: 61  TDAGVYLAVSLACVVPL 77
           T+AG+ LAV+LAC VP 
Sbjct: 190 TEAGIQLAVTLACAVPF 206