Miyakogusa Predicted Gene

Lj5g3v0510910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0510910.1 tr|O81977|O81977_SOYBN Rudimentary enhancer
(Fragment) OS=Glycine max PE=2 SV=1,87.1,0.0000007,ERH-like,NULL;
ER,Enhancer of
rudimentary,gene.Ljchr5_pseudomol_20120830.path1.gene1014.1
         (34 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g11660.1                                                        58   2e-09
Glyma17g34140.1                                                        58   2e-09
Glyma06g06410.1                                                        53   6e-08
Glyma06g06410.2                                                        53   7e-08

>Glyma14g11660.1 
          Length = 102

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 28/31 (90%)

Query: 4  NRHTIILMQTSHNRATRTFMDYASITQAMEA 34
          NRHTIILMQTS NRATRTFMDY SITQAM+ 
Sbjct: 3  NRHTIILMQTSQNRATRTFMDYESITQAMDG 33


>Glyma17g34140.1 
          Length = 102

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 28/31 (90%)

Query: 4  NRHTIILMQTSHNRATRTFMDYASITQAMEA 34
          NRHTIILMQTS NRATRTFMDY SITQAM+ 
Sbjct: 3  NRHTIILMQTSQNRATRTFMDYESITQAMDG 33


>Glyma06g06410.1 
          Length = 67

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 26/29 (89%)

Query: 4  NRHTIILMQTSHNRATRTFMDYASITQAM 32
          NRHTIILMQ S NRATRTFMD+ SITQAM
Sbjct: 3  NRHTIILMQASPNRATRTFMDFESITQAM 31


>Glyma06g06410.2 
          Length = 56

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 26/29 (89%)

Query: 4  NRHTIILMQTSHNRATRTFMDYASITQAM 32
          NRHTIILMQ S NRATRTFMD+ SITQAM
Sbjct: 3  NRHTIILMQASPNRATRTFMDFESITQAM 31