Miyakogusa Predicted Gene

Lj5g3v0510890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0510890.1 Non Chatacterized Hit- tr|I3T9E4|I3T9E4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1; EXOSOME
COMPLEX EXONUCLEASE RRP42 (RIBOSOMAL RNA ,CUFF.53124.1
         (180 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g26780.1                                                       277   4e-75
Glyma02g07710.1                                                       276   7e-75
Glyma14g00740.1                                                       171   6e-43
Glyma08g20390.1                                                       113   1e-25
Glyma11g01740.1                                                        84   7e-17
Glyma01g43760.1                                                        83   1e-16
Glyma08g27080.1                                                        69   3e-12
Glyma14g22250.2                                                        67   1e-11
Glyma18g50270.1                                                        60   2e-09
Glyma14g22250.1                                                        60   2e-09

>Glyma16g26780.1 
          Length = 286

 Score =  277 bits (709), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 138/160 (86%), Positives = 144/160 (90%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           MVGLSLGE HFIQGGIAQDLRCDGRKRLTYRPI VETGVIPQ +GSAR+RMGAT+VIASV
Sbjct: 1   MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
           KAELGKPSLLQPDKGKVSIY+DCSSTAEPAFEGRGGD+L+AELS ALQR           
Sbjct: 61  KAELGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGA 120

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK 160
            IDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK 160


>Glyma02g07710.1 
          Length = 286

 Score =  276 bits (707), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 138/160 (86%), Positives = 143/160 (89%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           MVGLSLGE HFIQGGIAQDLRCDGRKRLTYRPI VETGVIPQ +GSAR+RMGAT+VIASV
Sbjct: 1   MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
           KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGD+L+AELS ALQ            
Sbjct: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQHCLLGGKSGEGA 120

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK 160
            IDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK 160


>Glyma14g00740.1 
          Length = 267

 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 106/158 (67%), Gaps = 9/158 (5%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           MVGLSLGE+HFIQGGI QDLRCDGRKR TY+PI VET VIPQ +GSAR+RMGAT+VIAS 
Sbjct: 1   MVGLSLGEKHFIQGGIGQDLRCDGRKRFTYKPISVETEVIPQTNGSARVRMGATDVIASA 60

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSS-------TAEPAFEGRGGDDLSAELSVALQRXXXX 113
           K      +L       + I +   S              GRGGD+L+AELS ALQR    
Sbjct: 61  KVAC--CNLTNEKSLYILIAVQLQSQLLRLHILLLFLLHGRGGDELAAELSNALQRCLLG 118

Query: 114 XXXXXXXXIDLSSLIVVEGKICWDLYIDGLVVSSDGNL 151
                   I LSSLIVVEGKICWDLYIDGL+V+SDGNL
Sbjct: 119 GKSGAGARIGLSSLIVVEGKICWDLYIDGLLVNSDGNL 156


>Glyma08g20390.1 
          Length = 226

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 67/92 (72%), Gaps = 9/92 (9%)

Query: 58  ASVKAELGKPSLLQPDKGKVSIYIDCSSTAEPAFE----GRGGDDLSAELSVALQRXXXX 113
             V+AELGKPSLLQP KGKV IYIDCSST EPAFE    GRGGD+L A+LS ALQ     
Sbjct: 61  TQVQAELGKPSLLQPHKGKVFIYIDCSSTTEPAFEEYSIGRGGDELRAKLSNALQ----- 115

Query: 114 XXXXXXXXIDLSSLIVVEGKICWDLYIDGLVV 145
                   IDL SLIVVEGKICWDLYIDGL++
Sbjct: 116 CCLLGGAGIDLLSLIVVEGKICWDLYIDGLLL 147


>Glyma11g01740.1 
          Length = 1058

 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 8/155 (5%)

Query: 4   LSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAE 63
           + L ++ FI+  +  DLR DGR+   YR + V+   + +  GSA + +G T V+  V A+
Sbjct: 631 MPLNDKKFIETALLSDLRLDGRRPSDYRKLTVK---LAKQDGSAEVHLGQTHVMTFVTAQ 687

Query: 64  LGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXID 123
           L +P   +P++G +SI+ + S  A+P+F+     D + EL   + R            ID
Sbjct: 688 LVRPYRDRPNEGSLSIFTEFSPMADPSFDPGRPSDAAVELGRVVDR-----GLRESRAID 742

Query: 124 LSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAA 158
             SL V+ GK+ W + +D  ++ + GNL+DA   A
Sbjct: 743 TESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIA 777


>Glyma01g43760.1 
          Length = 350

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 7   GERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGK 66
            +  FI+  +  DLR DGR+   YR + ++   + +  GSA + +G T VI  V A+L +
Sbjct: 14  NDNKFIETALLSDLRVDGRRPSDYRKLTIK---LAKQDGSAEVHLGQTHVITFVTAQLVR 70

Query: 67  PSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXIDLSS 126
           P   +P++G +SI+ + S  A+P+FE     D + EL   + R            ID  S
Sbjct: 71  PYRDRPNEGSLSIFTEFSPMADPSFEPGRPTDAAVELGRVVDR-----GLRESRAIDTES 125

Query: 127 LIVVEGKICWDLYIDGLVVSSDGNLLDALGAA 158
           L V+ GK+ W + +D  ++ + GNL+DA   A
Sbjct: 126 LCVLSGKLVWAIRVDIHILDNAGNLVDAANIA 157


>Glyma08g27080.1 
          Length = 302

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 18/151 (11%)

Query: 8   ERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKP 67
           ERH     +A+ +R DGR     R   +  G +  A+GSA +++G+T ++ ++K E+  P
Sbjct: 29  ERH-----LAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTILTAIKMEVMTP 83

Query: 68  SLLQPDKGKVSIYID----CSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXID 123
           SL  PD+G ++I       CS    P         +S +LS  +              ID
Sbjct: 84  SLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTIS---------SSKMID 134

Query: 124 LSSLIVVEGKICWDLYIDGLVVSSDGNLLDA 154
           L  L +V GK  W  Y+D   + +DG L DA
Sbjct: 135 LKELSLVSGKAAWMAYLDIYCLDADGALFDA 165


>Glyma14g22250.2 
          Length = 299

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 18/151 (11%)

Query: 8   ERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKP 67
           ERH     +A+ +R DGR     R   +  G +  A+GSA +++G+T ++ ++K E+  P
Sbjct: 29  ERH-----LAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTP 83

Query: 68  SLLQPDKGKVSIYID----CSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXID 123
           SL  PD+G ++I       CS    P         +S +LS  +              ID
Sbjct: 84  SLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTIS---------SSRMID 134

Query: 124 LSSLIVVEGKICWDLYIDGLVVSSDGNLLDA 154
           L  L +V GK  W  Y+D   + +DG L DA
Sbjct: 135 LKELSLVGGKAAWMAYLDIYCLDADGALFDA 165


>Glyma18g50270.1 
          Length = 311

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 28/160 (17%)

Query: 8   ERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKP 67
           ERH     +A+ +R DGR     R   +  G +  A+GSA +++G+T ++ ++K E+  P
Sbjct: 29  ERH-----LAESIRADGRPLGKARETSIFLGAVAFANGSALVKIGSTTMLTAIKMEIMTP 83

Query: 68  SLLQPDKGKVS--------IYID------CSSTAEPAFEGRGGDDLSAELSVALQRXXXX 113
           SL  PD+G +         + ID      CS    P         +S +LS  +      
Sbjct: 84  SLESPDEGCLDWLLLVGPLMSIDFHMPPICSPIVRPGRPAEASPMVSKQLSNTIS----- 138

Query: 114 XXXXXXXXIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLD 153
                    DL  L +V GK  W  Y+D   + +DG L D
Sbjct: 139 ----SSRMTDLKELSLVSGKAAWMAYLDIYCLDADGALFD 174


>Glyma14g22250.1 
          Length = 307

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 8   ERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKP 67
           ERH     +A+ +R DGR     R   +  G +  A+GSA +++G+T ++ ++K E+  P
Sbjct: 29  ERH-----LAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTP 83

Query: 68  SLLQPDKGKVSIYID----CSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXID 123
           SL  PD+G ++I       CS    P         +S +LS  +              ID
Sbjct: 84  SLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTIS---------SSRMID 134

Query: 124 LSSLIVVEGKICWDLYID-GLVVSSDGNLLDALGA 157
           L  L +V GK  W  Y++    +  D   LDA GA
Sbjct: 135 LKELSLVGGKAAWMAYLNAAFSIMQDIYCLDADGA 169