Miyakogusa Predicted Gene

Lj5g3v0308500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308500.1 tr|I3S194|I3S194_LOTJA 40S ribosomal protein S24
OS=Lotus japonicus PE=2 SV=1,96.35,0,Ribosomal proteins S24e, L23 and
L15e,Ribosomal protein L23/L15e core domain; 40S RIBOSOMAL PROTEIN
,CUFF.52826.1
         (137 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g40530.1                                                       244   2e-65
Glyma19g43190.1                                                       242   9e-65
Glyma20g37190.2                                                       240   3e-64
Glyma10g30200.1                                                       239   5e-64
Glyma20g37190.1                                                       239   7e-64
Glyma20g37190.3                                                       193   4e-50
Glyma04g38980.1                                                       164   3e-41
Glyma17g15660.1                                                       155   1e-38
Glyma17g15630.1                                                       121   2e-28

>Glyma03g40530.1 
          Length = 137

 Score =  244 bits (622), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/122 (95%), Positives = 122/122 (100%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+VDVLHPGRANVSKAELKEKLAR+YDVKDPNTVFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYD++ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDTMENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122


>Glyma19g43190.1 
          Length = 137

 Score =  242 bits (617), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 116/122 (95%), Positives = 122/122 (100%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+VDVLHPGRANVSKAELKEKLAR+Y+VKDPNTVFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYD++ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122


>Glyma20g37190.2 
          Length = 137

 Score =  240 bits (613), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/122 (95%), Positives = 120/122 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKL R+YDVKD NTVFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDS+ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122


>Glyma10g30200.1 
          Length = 137

 Score =  239 bits (611), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/122 (95%), Positives = 120/122 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+VDVLHPGRANVSKAELKEKL R+YDVKD NTVFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDS+ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122


>Glyma20g37190.1 
          Length = 138

 Score =  239 bits (610), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 117/122 (95%), Positives = 120/122 (98%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKL R+YDVKD NTVFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDS+ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122


>Glyma20g37190.3 
          Length = 115

 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/98 (94%), Positives = 96/98 (97%)

Query: 25  IVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENA 84
           IVDVLHPGRANVSKAELKEKL R+YDVKD NTVFVFKFRTHFGGGKSTGFGLIYDS+ENA
Sbjct: 3   IVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENA 62

Query: 85  KKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 122
           KKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIRGV
Sbjct: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 100


>Glyma04g38980.1 
          Length = 138

 Score =  164 bits (414), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 96/129 (74%), Gaps = 12/129 (9%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAE------------LKEKLARL 48
           MADK VTIRT+KFMTNRLLS+KQFI ++ H  R  +   +            L EKL R+
Sbjct: 1   MADKVVTIRTKKFMTNRLLSKKQFISNLCHYEREPLDPYQQILLGFYRRANLLFEKLGRM 60

Query: 49  YDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQ 108
           YD+KD   VFVFKF+ HFGGGKS GFGLIYDS+ENAKKYEPKYR I+NGLDTKVEK RKQ
Sbjct: 61  YDMKDTKIVFVFKFQPHFGGGKSIGFGLIYDSVENAKKYEPKYRFIKNGLDTKVEKLRKQ 120

Query: 109 LKERKNRAK 117
           +KERKN  K
Sbjct: 121 MKERKNMTK 129


>Glyma17g15660.1 
          Length = 119

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 87/122 (71%), Gaps = 18/122 (14%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTR FMT RLLS KQF++DVLHPG AN SKAELKEKL R+YD KD N VF F
Sbjct: 1   MADKAVTIRTRMFMTTRLLSGKQFVIDVLHPGSANDSKAELKEKLRRMYDEKDTNPVFAF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTG  L                    GL  K EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGVSL------------------STGLSGKEEKSRKQMKERKNRAKKIR 102

Query: 121 GV 122
           GV
Sbjct: 103 GV 104


>Glyma17g15630.1 
          Length = 105

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 73/104 (70%), Gaps = 14/104 (13%)

Query: 19  LSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIY 78
           +S KQF++DVLHPG ANVSKAELKEKL R+YD K  N VFVFKFRTHFGGGKSTG  L  
Sbjct: 1   MSLKQFVIDVLHPGSANVSKAELKEKLRRMYDGKGTNLVFVFKFRTHFGGGKSTGM-LRS 59

Query: 79  DSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 122
            SL               GL  K EKSRKQ+KERKNRAKKI GV
Sbjct: 60  VSLS-------------TGLSGKEEKSRKQMKERKNRAKKICGV 90