Miyakogusa Predicted Gene

Lj5g3v0308350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308350.1 Non Chatacterized Hit- tr|Q9C9P6|Q9C9P6_ARATH
Putative ribosomal protein S9; 44165-44563 OS=Arabidop,51.89,4e-19,no
description,Ribosomal protein S5 domain 2-type fold, subgroup;
seg,NULL; Ribosomal protein S5 dom,CUFF.52794.1
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g36580.1                                                       129   5e-31
Glyma14g08490.1                                                       126   6e-30

>Glyma17g36580.1 
          Length = 207

 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 76/93 (81%), Gaps = 2/93 (2%)

Query: 20  NISHNPQTLTYART-TQPLSLSRVPKTPS-LTVSAAAPVEPETENPMKYVKSRLPGGVAA 77
           +IS  P TL++ART +  +S+SR PKTPS L VSA A  EPETE+   YVKSRLPGG AA
Sbjct: 20  HISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAA 79

Query: 78  QTTIGTGRRKSAIARVVLQEGTGKFIINYRDAK 110
           QT IGTGRRKSAIARVVLQEGTGKFIINYRDAK
Sbjct: 80  QTIIGTGRRKSAIARVVLQEGTGKFIINYRDAK 112


>Glyma14g08490.1 
          Length = 207

 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 76/93 (81%), Gaps = 2/93 (2%)

Query: 20  NISHNPQTLTYART-TQPLSLSRVPKTPS-LTVSAAAPVEPETENPMKYVKSRLPGGVAA 77
           +IS  P TL++ART +  LS+S  PKTPS L V+A A  EPETE+  KYVKSRLPGG AA
Sbjct: 20  HISQRPCTLSFARTESLSLSVSPFPKTPSSLVVTATALAEPETEDLKKYVKSRLPGGFAA 79

Query: 78  QTTIGTGRRKSAIARVVLQEGTGKFIINYRDAK 110
           QT IGTGRRKSAIARVVLQEGTGKFIINYRDAK
Sbjct: 80  QTIIGTGRRKSAIARVVLQEGTGKFIINYRDAK 112