Miyakogusa Predicted Gene

Lj5g3v0292810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0292810.1 Non Chatacterized Hit- tr|I3SY08|I3SY08_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,100,9.94922e-44,LSM,Ribonucleoprotein LSM domain; no
description,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL; SMALL
NUC,CUFF.52751.1
         (88 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g07060.1                                                       156   5e-39
Glyma20g21250.1                                                       155   6e-39
Glyma17g07060.2                                                       135   7e-33
Glyma09g39830.1                                                        74   4e-14
Glyma18g46370.1                                                        71   3e-13
Glyma09g39830.2                                                        67   4e-12

>Glyma17g07060.1 
          Length = 88

 Score =  156 bits (394), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
          MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL
Sbjct: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGV 76
          GEILIRCNNVLYLRGV
Sbjct: 61 GEILIRCNNVLYLRGV 76


>Glyma20g21250.1 
          Length = 88

 Score =  155 bits (393), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
          MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL
Sbjct: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGV 76
          GEILIRCNNVLYLRGV
Sbjct: 61 GEILIRCNNVLYLRGV 76


>Glyma17g07060.2 
          Length = 78

 Score =  135 bits (341), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
          MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL
Sbjct: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60

Query: 61 GEILIR 66
          GEILIR
Sbjct: 61 GEILIR 66


>Glyma09g39830.1 
          Length = 91

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
          P  FL ++ G+PV+VKL  G++Y+G L  +D YMN+ +  TEEY+ GQ     G+  IR 
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 68 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80


>Glyma18g46370.1 
          Length = 91

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
          P  FL ++ G+PV+VKL  G++Y+G L  +D YMN+ +  TEEY+ GQ     G+  IR 
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 68 NNVLYL 73
          NN LY+
Sbjct: 75 NNGLYI 80


>Glyma09g39830.2 
          Length = 80

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
          P  FL ++ G+PV+VKL  G++Y+G L  +D YMN+ +  TEEY+ GQ     G+  IR 
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 68 NN 69
          NN
Sbjct: 75 NN 76