Miyakogusa Predicted Gene

Lj5g3v0109850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0109850.1 Non Chatacterized Hit- tr|B8A1Y4|B8A1Y4_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,59.09,3e-18,Hypothetical
protein TM0160,Bifunctional nuclease; DNase-RNase,Bifunctional
nuclease,CUFF.52836.1
         (327 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g07830.1                                                       397   e-111
Glyma1784s00200.1                                                     332   5e-91
Glyma17g37160.1                                                       189   4e-48
Glyma11g08700.4                                                       121   1e-27
Glyma11g08700.1                                                       121   1e-27
Glyma11g08700.6                                                       120   2e-27
Glyma11g08700.5                                                       120   2e-27
Glyma01g36640.1                                                       112   8e-25
Glyma11g08700.3                                                        86   6e-17
Glyma11g08700.2                                                        86   6e-17

>Glyma14g07830.1 
          Length = 250

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/253 (81%), Positives = 218/253 (86%), Gaps = 14/253 (5%)

Query: 1   MGSVQGPAVCPS---KLAGFCSLPMMGP--MNVRCIRSEFLGLNGGGSKAKQRGFLSCDV 55
           M SVQGP VCPS   K  GFCS+PM+G   MNVR IRSEF GLNG  +K    GFLSC +
Sbjct: 1   MSSVQGPVVCPSVRAKQVGFCSIPMIGAVKMNVRRIRSEFWGLNGAKAKP---GFLSCHI 57

Query: 56  NTRKCWTVVRCSFNPSSSNDS----ENFIEKDEEYVNSSVIEAVEVKSGADGFIIKMRDG 111
           NTRKC TV  C+FN S SNDS    +NF EKDE+YV SSVIEAVEVKSGADGFIIKMRDG
Sbjct: 58  NTRKCKTV-HCTFN-SPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDG 115

Query: 112 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRDVPIARP 171
           RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIR+VPIARP
Sbjct: 116 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARP 175

Query: 172 TLYQVVKEMIDKMGYEVRLVRVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAV 231
           TLYQVVKEMIDKMGYEV+ VRVTRRVHEAYFAQLYLTKVGN+AE  +FDLRPSDAINIAV
Sbjct: 176 TLYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIAV 235

Query: 232 RCKVPIQVNKYLA 244
           RCKVPIQVNK L 
Sbjct: 236 RCKVPIQVNKVLG 248


>Glyma1784s00200.1 
          Length = 209

 Score =  332 bits (850), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 173/213 (81%), Positives = 183/213 (85%), Gaps = 14/213 (6%)

Query: 1   MGSVQGPAVCPS---KLAGFCSLPMMGP--MNVRCIRSEFLGLNGGGSKAKQRGFLSCDV 55
           M SVQGP VCPS   K  GFCS+PM+G   MNVR IRSEF GLNG  +K    GFLSC +
Sbjct: 1   MSSVQGPVVCPSVRAKQVGFCSIPMIGAVKMNVRRIRSEFWGLNGAKAKP---GFLSCRI 57

Query: 56  NTRKCWTVVRCSFNPSSSNDS----ENFIEKDEEYVNSSVIEAVEVKSGADGFIIKMRDG 111
           NTRK +  V C+FN S SNDS    +NF EKDE+YVNSSVIEAVEVKSGADGFIIKMRDG
Sbjct: 58  NTRK-YKTVHCTFN-SPSNDSGSTADNFNEKDEDYVNSSVIEAVEVKSGADGFIIKMRDG 115

Query: 112 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRDVPIARP 171
           RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIR+VPIARP
Sbjct: 116 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARP 175

Query: 172 TLYQVVKEMIDKMGYEVRLVRVTRRVHEAYFAQ 204
           TLYQVVKEMIDKMGYEV+LVRVTRRVHEAYFAQ
Sbjct: 176 TLYQVVKEMIDKMGYEVKLVRVTRRVHEAYFAQ 208


>Glyma17g37160.1 
          Length = 153

 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/121 (76%), Positives = 99/121 (81%), Gaps = 1/121 (0%)

Query: 191 VRVT-RRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM 249
           +RVT R ++     + Y   VGNEAE  +FDLRPSDAINIAVRCKVPIQVNKYLAYSDGM
Sbjct: 12  IRVTIRTLYHFLLKKTYFYLVGNEAEYVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM 71

Query: 250 RVIESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRD 309
           RVIESGKLSTQFPG DGRLFTEMDRP+GQPC ET EFNLLHNMLKAV EERYKDA     
Sbjct: 72  RVIESGKLSTQFPGMDGRLFTEMDRPSGQPCSETTEFNLLHNMLKAVVEERYKDAVFLNV 131

Query: 310 R 310
           R
Sbjct: 132 R 132


>Glyma11g08700.4 
          Length = 324

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 112/189 (59%), Gaps = 7/189 (3%)

Query: 133 PAIVLKMEDGTGLLLPIIVLEMPSVLLM-AAIRDVPIARPTLYQVVKEMIDKMGYEVRLV 191
           P I L++      +LPI+V ++    LM A      +  P  YQ V+ ++ ++ +EV +V
Sbjct: 139 PTIFLRISCDGDYILPIVVGQIAIEKLMDAESEQESVECPDQYQFVENLVGRLDHEVIMV 198

Query: 192 RVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 251
           R+T RV   YFA+LYL++ G + +  + D RPSDAIN+A RCK PI V+K + ++D +R+
Sbjct: 199 RITERVVSTYFARLYLSQPG-KTDLISVDARPSDAINVANRCKAPIYVSKEIVFTDAIRI 257

Query: 252 -IESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDR 310
               G    +   +D  L + +D P+    +  +E +++HNM  A+ +ER+KDAA+WRD+
Sbjct: 258 GYGMGGAHNKKAIYDVLLDSAIDGPD----LVAQELSMMHNMHSAIKQERFKDAAIWRDK 313

Query: 311 LNQLRAGKN 319
           L  LR   +
Sbjct: 314 LANLRKSTH 322


>Glyma11g08700.1 
          Length = 324

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 112/189 (59%), Gaps = 7/189 (3%)

Query: 133 PAIVLKMEDGTGLLLPIIVLEMPSVLLM-AAIRDVPIARPTLYQVVKEMIDKMGYEVRLV 191
           P I L++      +LPI+V ++    LM A      +  P  YQ V+ ++ ++ +EV +V
Sbjct: 139 PTIFLRISCDGDYILPIVVGQIAIEKLMDAESEQESVECPDQYQFVENLVGRLDHEVIMV 198

Query: 192 RVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 251
           R+T RV   YFA+LYL++ G + +  + D RPSDAIN+A RCK PI V+K + ++D +R+
Sbjct: 199 RITERVVSTYFARLYLSQPG-KTDLISVDARPSDAINVANRCKAPIYVSKEIVFTDAIRI 257

Query: 252 -IESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDR 310
               G    +   +D  L + +D P+    +  +E +++HNM  A+ +ER+KDAA+WRD+
Sbjct: 258 GYGMGGAHNKKAIYDVLLDSAIDGPD----LVAQELSMMHNMHSAIKQERFKDAAIWRDK 313

Query: 311 LNQLRAGKN 319
           L  LR   +
Sbjct: 314 LANLRKSTH 322


>Glyma11g08700.6 
          Length = 225

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 113/190 (59%), Gaps = 7/190 (3%)

Query: 132 HPAIVLKMEDGTGLLLPIIVLEMPSVLLM-AAIRDVPIARPTLYQVVKEMIDKMGYEVRL 190
           +P I L++      +LPI+V ++    LM A      +  P  YQ V+ ++ ++ +EV +
Sbjct: 39  NPTIFLRISCDGDYILPIVVGQIAIEKLMDAESEQESVECPDQYQFVENLVGRLDHEVIM 98

Query: 191 VRVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMR 250
           VR+T RV   YFA+LYL++ G + +  + D RPSDAIN+A RCK PI V+K + ++D +R
Sbjct: 99  VRITERVVSTYFARLYLSQPG-KTDLISVDARPSDAINVANRCKAPIYVSKEIVFTDAIR 157

Query: 251 V-IESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRD 309
           +    G    +   +D  L + +D P+    +  +E +++HNM  A+ +ER+KDAA+WRD
Sbjct: 158 IGYGMGGAHNKKAIYDVLLDSAIDGPD----LVAQELSMMHNMHSAIKQERFKDAAIWRD 213

Query: 310 RLNQLRAGKN 319
           +L  LR   +
Sbjct: 214 KLANLRKSTH 223


>Glyma11g08700.5 
          Length = 225

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 113/190 (59%), Gaps = 7/190 (3%)

Query: 132 HPAIVLKMEDGTGLLLPIIVLEMPSVLLM-AAIRDVPIARPTLYQVVKEMIDKMGYEVRL 190
           +P I L++      +LPI+V ++    LM A      +  P  YQ V+ ++ ++ +EV +
Sbjct: 39  NPTIFLRISCDGDYILPIVVGQIAIEKLMDAESEQESVECPDQYQFVENLVGRLDHEVIM 98

Query: 191 VRVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMR 250
           VR+T RV   YFA+LYL++ G + +  + D RPSDAIN+A RCK PI V+K + ++D +R
Sbjct: 99  VRITERVVSTYFARLYLSQPG-KTDLISVDARPSDAINVANRCKAPIYVSKEIVFTDAIR 157

Query: 251 V-IESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRD 309
           +    G    +   +D  L + +D P+    +  +E +++HNM  A+ +ER+KDAA+WRD
Sbjct: 158 IGYGMGGAHNKKAIYDVLLDSAIDGPD----LVAQELSMMHNMHSAIKQERFKDAAIWRD 213

Query: 310 RLNQLRAGKN 319
           +L  LR   +
Sbjct: 214 KLANLRKSTH 223


>Glyma01g36640.1 
          Length = 305

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 107/184 (58%), Gaps = 18/184 (9%)

Query: 133 PAIVLKMEDGTGLLLPIIVLEMPSVLLM-AAIRDVPIARPTLYQVVKEMIDKMGYEVRLV 191
           P I L++      +LPI+V ++    LM A      +  P  YQ V+ ++ ++ +EV +V
Sbjct: 133 PTIFLRISCDGDYILPIVVGQIAIEKLMDAESEHESVECPDQYQFVENLVGRLDHEVIMV 192

Query: 192 RVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 251
           R+T RV   YFA+LYL++ G + +  + D RPSDAIN+A RCK  I V+K + ++D +R+
Sbjct: 193 RITERVVSTYFARLYLSQPG-KTDLISVDARPSDAINVANRCKAAIYVSKEIVFTDAIRI 251

Query: 252 IESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDRL 311
                      G+ G     +D P+    +  +E +++HNM  A+ +ER+KDAA+WRD+L
Sbjct: 252 -----------GY-GMGGVAVDGPD----LVAQELSMMHNMRIAIKQERFKDAAIWRDKL 295

Query: 312 NQLR 315
             LR
Sbjct: 296 ANLR 299


>Glyma11g08700.3 
          Length = 281

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 2/120 (1%)

Query: 133 PAIVLKMEDGTGLLLPIIVLEMPSVLLM-AAIRDVPIARPTLYQVVKEMIDKMGYEVRLV 191
           P I L++      +LPI+V ++    LM A      +  P  YQ V+ ++ ++ +EV +V
Sbjct: 139 PTIFLRISCDGDYILPIVVGQIAIEKLMDAESEQESVECPDQYQFVENLVGRLDHEVIMV 198

Query: 192 RVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 251
           R+T RV   YFA+LYL++ G + +  + D RPSDAIN+A RCK PI V+K + ++D +R+
Sbjct: 199 RITERVVSTYFARLYLSQPG-KTDLISVDARPSDAINVANRCKAPIYVSKEIVFTDAIRI 257


>Glyma11g08700.2 
          Length = 281

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 2/120 (1%)

Query: 133 PAIVLKMEDGTGLLLPIIVLEMPSVLLM-AAIRDVPIARPTLYQVVKEMIDKMGYEVRLV 191
           P I L++      +LPI+V ++    LM A      +  P  YQ V+ ++ ++ +EV +V
Sbjct: 139 PTIFLRISCDGDYILPIVVGQIAIEKLMDAESEQESVECPDQYQFVENLVGRLDHEVIMV 198

Query: 192 RVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 251
           R+T RV   YFA+LYL++ G + +  + D RPSDAIN+A RCK PI V+K + ++D +R+
Sbjct: 199 RITERVVSTYFARLYLSQPG-KTDLISVDARPSDAINVANRCKAPIYVSKEIVFTDAIRI 257