Miyakogusa Predicted Gene

Lj5g3v0108610.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0108610.1 tr|I1HPQ6|I1HPQ6_BRADI 50S ribosomal protein L31
OS=Brachypodium distachyon GN=BRADI2G44440 PE=3 SV=,57.14,3e-19,L31:
ribosomal protein L31,Ribosomal protein L31; Ribosomal_L31,Ribosomal
protein L31; RIBOSOMALL31,,CUFF.52568.1
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g07900.1                                                       201   3e-52
Glyma14g07900.2                                                       199   9e-52
Glyma17g37110.1                                                       195   1e-50

>Glyma14g07900.1 
          Length = 134

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 113/128 (88%), Gaps = 7/128 (5%)

Query: 20  MAQCVTNTFVQGGKPLLPL---PTKTTVGRRAENVTVGVWCRKKDIHPKFYDDAKVSCSG 76
           MAQCVTNTFVQG KP LP+   PTK  V RRA  V  GVWC+KK+IHP+FY+++KV C+G
Sbjct: 1   MAQCVTNTFVQG-KPFLPVAAAPTKNQV-RRA--VQCGVWCKKKEIHPQFYEESKVYCNG 56

Query: 77  ELVMTTGGTQKEYVVDVWSGNHPFFLGNRSASMISDDQVEKFKKKYGELTDIMEIPNLKG 136
           ELV+TTGGTQKEYVVDVWSGNHPF+LG+RSASM+SDDQVEKF+KK+GEL +IMEIP LKG
Sbjct: 57  ELVLTTGGTQKEYVVDVWSGNHPFYLGSRSASMVSDDQVEKFRKKFGELKEIMEIPVLKG 116

Query: 137 EIVIPSRR 144
           EIVIPSRR
Sbjct: 117 EIVIPSRR 124


>Glyma14g07900.2 
          Length = 133

 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 97/128 (75%), Positives = 112/128 (87%), Gaps = 8/128 (6%)

Query: 20  MAQCVTNTFVQGGKPLLPL---PTKTTVGRRAENVTVGVWCRKKDIHPKFYDDAKVSCSG 76
           MAQCVTNTFVQG KP LP+   PTK    RRA  V  GVWC+KK+IHP+FY+++KV C+G
Sbjct: 1   MAQCVTNTFVQG-KPFLPVAAAPTKNV--RRA--VQCGVWCKKKEIHPQFYEESKVYCNG 55

Query: 77  ELVMTTGGTQKEYVVDVWSGNHPFFLGNRSASMISDDQVEKFKKKYGELTDIMEIPNLKG 136
           ELV+TTGGTQKEYVVDVWSGNHPF+LG+RSASM+SDDQVEKF+KK+GEL +IMEIP LKG
Sbjct: 56  ELVLTTGGTQKEYVVDVWSGNHPFYLGSRSASMVSDDQVEKFRKKFGELKEIMEIPVLKG 115

Query: 137 EIVIPSRR 144
           EIVIPSRR
Sbjct: 116 EIVIPSRR 123


>Glyma17g37110.1 
          Length = 134

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 109/126 (86%), Gaps = 3/126 (2%)

Query: 20  MAQCVT-NTFVQGGKPLLPLPTKTTVGRRAENVTVGVWCRKKDIHPKFYDDAKVSCSGEL 78
           MAQCVT NTFVQG KP LP+P   T   R   V  GVWCRKK+IHP+F+++AKV C+GEL
Sbjct: 1   MAQCVTKNTFVQG-KPFLPVPAAPTKNVR-RVVQCGVWCRKKEIHPQFHEEAKVYCNGEL 58

Query: 79  VMTTGGTQKEYVVDVWSGNHPFFLGNRSASMISDDQVEKFKKKYGELTDIMEIPNLKGEI 138
           V+TTGGTQKEYVVDVWSGNHPF+LG+RSASM+SDDQVEKF+KK+GEL +IMEIP LKGEI
Sbjct: 59  VLTTGGTQKEYVVDVWSGNHPFYLGSRSASMVSDDQVEKFRKKFGELKEIMEIPVLKGEI 118

Query: 139 VIPSRR 144
           VIPSRR
Sbjct: 119 VIPSRR 124