Miyakogusa Predicted Gene

Lj5g3v0105860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0105860.1 tr|G7IST4|G7IST4_MEDTR G-box binding factor bZIP
transcription factor OS=Medicago truncatula
GN=MTR_,21.18,0.00000003,RVT_3,NULL; Ribonuclease H-like,Ribonuclease
H-like domain,gene.g58347.t1.1
         (210 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma1103s00200.1                                                      53   2e-07
Glyma13g31600.1                                                        50   1e-06
Glyma17g23880.1                                                        49   6e-06

>Glyma1103s00200.1 
          Length = 126

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query: 3  IDLTCPLYAMEPETAVHSLLLCSFAQAVWFTCPLGLQVATCPVGSVSQFLAERVSEADEV 62
          +DL C    MEPE+ +H L  C +A  +W  CPL L        + S ++ E     DE 
Sbjct: 5  VDLLCDRCGMEPESTIHVLKGCPWASGIWLLCPLALHTQQMQALNFSDWVKEMGKCLDEE 64

Query: 63 VIVCAAAVMEALWECRNKVVFED 85
           +     V  ALW  RN ++F+D
Sbjct: 65 QLELMLVVAWALWSDRNLLLFQD 87


>Glyma13g31600.1 
          Length = 102

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 114 VILAQELFFQDVHLETDCYSFYEAWLK--GGDETYMGMLIRDCLLLSGNFRSFHVSFIRR 171
           +I   EL F  V  ETDC    +AW +  GGD +Y G L+ D    S +F +  +  ++R
Sbjct: 1   MITDAELLFTKVLFETDCIRLKQAWDRSIGGDYSYFGGLVSDYRTKSRSFAACRLCHVKR 60

Query: 172 TGNMAADFMAKLAYS 186
             NM AD + KLAY+
Sbjct: 61  GSNMEADSLFKLAYN 75


>Glyma17g23880.1 
          Length = 113

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%)

Query: 12 MEPETAVHSLLLCSFAQAVWFTCPLGLQVATCPVGSVSQFLAERVSEADEVVIVCAAAVM 71
          MEPE+ +H L  C +A  +W  CPL L        + S ++ E     DE  +     V 
Sbjct: 1  MEPESTIHVLKGCPWASGIWLLCPLALHTQQMQALNFSDWVKEMGKCLDEEQLELMLVVA 60

Query: 72 EALWECRNKVVFED 85
           ALW  RN ++F+D
Sbjct: 61 WALWSDRNLLLFQD 74