Miyakogusa Predicted Gene

Lj5g3v0086210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0086210.2 Non Chatacterized Hit- tr|K4A7I1|K4A7I1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si034837,38.69,1e-16,seg,NULL,CUFF.52502.2
         (235 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g36720.1                                                       139   4e-33

>Glyma17g36720.1 
          Length = 325

 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 107/177 (60%), Gaps = 9/177 (5%)

Query: 54  SPNPKPLSTVATSSSPTXXXXXXXXXXXXXQPPPLNHRERIALQRHQEARPL---LLKAH 110
           S  P   S V TS+SP              Q PP      + L RH+  + L   L +  
Sbjct: 7   SWTPSTFSIVPTSASPFLLLATIPVFSNPPQQPPTPSPPLLPLSRHRNGKSLELWLTRVG 66

Query: 111 ECLLKSIRLLGAMSTLRSDSSCLK-ECLSGQHSKHSFVELGELIPSLEVTLNLRLGDSDT 169
            CL KS  LL A+  L+S S C K EC  GQHS   FV+L ++ P LEVTLNLR+GD+D+
Sbjct: 67  CCLQKSTELLNALKALKSGSRCSKRECEGGQHS---FVDLVQVAPQLEVTLNLRVGDADS 123

Query: 170 DPHQKLNDLEDSPSVQCYEQRVLPAFNNLVANDTKDDAVAEILSNNYIMPRESCFYM 226
           DPH   NDLE+   V C    VLPAFNNLVANDTKDDAVAEIL+N YIMP+ESCFYM
Sbjct: 124 DPHLPPNDLEEIRLV-C-NAAVLPAFNNLVANDTKDDAVAEILNNRYIMPQESCFYM 178