Miyakogusa Predicted Gene

Lj4g3v3113320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113320.1 tr|B9GYI8|B9GYI8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555245 PE=4 SV=1,26.8,9e-18,no
description,NULL; F-box domain,F-box domain, cyclin-like;
seg,NULL,CUFF.52339.1
         (393 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g17640.1                                                        52   9e-07

>Glyma20g17640.1 
          Length = 367

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 29/226 (12%)

Query: 36  KCVSRQWLTLISDQQFRESHRDKHQRYNTSLIFNPKASGR-----IEIPHILC-FTAXXX 89
           KCVS+ W  LISD +F +SH D         +F    +       +E    LC  +A   
Sbjct: 50  KCVSKSWCALISDPEFAKSHIDMAAAPTHRFLFTSSNASELNAIDVEAEEPLCDDSANVV 109

Query: 90  XXXXXXXRFNLNFLHQYELNVVRSCNGIILCH--GLDPFNYFICNPITREFTSLSLPSWF 147
                   F     +++ + VV SC G IL    GLD   + + NP      S  L    
Sbjct: 110 FKVPPSSTFK---YYKHSVRVVGSCRGFILLMFTGLDSIGFIVWNP------STGLGKEI 160

Query: 148 KSKPPRNRTLFLA---FNPF--QIISVAAVNASKLDWVFNVYSFKSRSWIHSQSEILRST 202
             KP      +L+   ++P     + V  + + +       +S ++ SW  ++S   ++ 
Sbjct: 161 LHKPMERSCEYLSGFGYDPSTDDYVIVNVILSRRKHPKIECFSLRANSWSCTKS---KAP 217

Query: 203 SSELDDVGHGVYCNRAIHWC----NRGYFFIYFHLDTKCLQNLPIP 244
             E    G GV+ N A+HW     ++    I F +  + L  +P+P
Sbjct: 218 YRENLTFGDGVFLNGALHWLVKPKDKVAVIIAFDVTKRTLLEIPLP 263