Miyakogusa Predicted Gene

Lj4g3v3097120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3097120.1 tr|G7JX53|G7JX53_MEDTR Replication protein
A1-like protein OS=Medicago truncatula GN=MTR_5g053590
PE,30.86,2e-17,seg,NULL; no description,Nucleic acid-binding, OB-fold;
REPLICATION FACTOR A 1, RFA1,NULL; DUF223,Do,gene.g58016.t1.1
         (371 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        81   2e-15
Glyma11g27090.1                                                        79   8e-15

>Glyma18g33200.1 
          Length = 126

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 22  VRITNLWVVE--------KSSKVN-AMEMIFMDQKGGKITAVVKKFDIDKWKSMLKEDNT 72
           VR+ +LW+V          SSK+  +MEM+ +D KG ++   VK+  I K+   L+E   
Sbjct: 2   VRVVHLWMVSDVSNNKQTSSSKIPLSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQEGKW 61

Query: 73  YIVQNFEVNHNDGQFRTSNHPYKLVFMKGTIVQARQIPEIPHNIYHFTPFDDILAGGAST 132
           Y +Q F V  N G +RT++H YK+VF   T V       IP+++Y F P  DI+ GG  T
Sbjct: 62  YSIQFFGVAENGGIYRTTHHKYKIVFQYSTKVALVDNASIPNSMYDFVPIRDIVCGGYDT 121

Query: 133 EVLV 136
           + LV
Sbjct: 122 DYLV 125


>Glyma11g27090.1 
          Length = 206

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 62/95 (65%), Gaps = 1/95 (1%)

Query: 8   IAEVDDSKETWKLGVRITNLWVVEKSSKVNAMEMIFMDQKGGKITAVVKKFDIDKWKSML 67
           IAE+DD KET K+ VR+ N+W + +S K + +E+I +D+KG KI A ++  D+     + 
Sbjct: 4   IAEIDDQKETCKIIVRVINMWTIPRSPK-SIVELILVDKKGDKILAQMRNVDVQLDNVIF 62

Query: 68  KEDNTYIVQNFEVNHNDGQFRTSNHPYKLVFMKGT 102
              +TY+++NFEV  N G ++ + H +K+ F+K T
Sbjct: 63  DVGHTYVIKNFEVEKNSGHYKATRHGFKINFVKTT 97