Miyakogusa Predicted Gene

Lj4g3v3055160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3055160.1 tr|C0JJI3|C0JJI3_SOYBN Retrotransposon protein
OS=Glycine max PE=4 SV=1,37.18,0.000003,seg,NULL,CUFF.52193.1
         (637 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g41410.1                                                        55   3e-07
Glyma18g53910.1                                                        55   3e-07
Glyma18g24730.1                                                        54   7e-07
Glyma12g28850.1                                                        52   1e-06

>Glyma06g41410.1 
          Length = 1534

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 124 SQPKLKITVFNGSDPTMWLLNTETFFLMHPWELQLRFAFIALHLEGFALTWFKLWRHQLD 183
           S  K+++  FNG DP  W+   ET+F +     ++      L +EG  + WF LWR   +
Sbjct: 109 SAKKVELPSFNGDDPVAWITQAETYFEVQRISEEVSIQLTKLSMEGPTIHWFNLWRDSTE 168

Query: 184 --SWEKFLEVFKLQFGA 198
             +WE   E   ++FG 
Sbjct: 169 ELTWENLTEAMMIRFGG 185


>Glyma18g53910.1 
          Length = 1434

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 127 KLKITVFNGSDPTMWLLNTETFFLMHPWELQLRFAFIALHLEGFALTWFKLW---RHQLD 183
           KL +  F+GSDP  W+     FF  H      R    + ++EG AL WF+ W    HQL 
Sbjct: 68  KLDVPRFDGSDPFGWVFKISQFFEYHGIPDSERLTVASFYMEGPALAWFQ-WMARNHQLP 126

Query: 184 SWEKFLEVFKLQFGATNY 201
           SW  FL+  + +F  + Y
Sbjct: 127 SWSGFLQAIEARFALSPY 144


>Glyma18g24730.1 
          Length = 1319

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 127 KLKITVFNGSDPTMWLLNTETFFLMHPWELQLRFAFIALHLEGFALTWFKLWRHQ---LD 183
           KL +  F+GSD T W+     FF  H      R    + ++EG AL WF+ W H+   L 
Sbjct: 70  KLDVPRFDGSDATGWIFKITQFFEYHTTPDHERLTIASFYMEGQALAWFQ-WMHRNGHLS 128

Query: 184 SWEKFLEVFKLQFGATNY 201
           SW  FL     +F +T Y
Sbjct: 129 SWPAFLHALHSRFASTTY 146


>Glyma12g28850.1 
          Length = 1125

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 127 KLKITVFNGSDPTMWLLNTETFFLMHPWELQLRFAFIALHLEGFALTWFKLWR---HQLD 183
           KL++  F+G+DP+ W+     FF  H      R    + ++EG AL WF+ W+    QL 
Sbjct: 72  KLEVPRFDGTDPSGWIFKINQFFAYHVTPEHERLTIASFYMEGPALAWFQ-WKTRNGQLT 130

Query: 184 SWEKFLEVFKLQFGATNY 201
           SW   L+  + +F  + Y
Sbjct: 131 SWSGLLQALEARFAPSQY 148