Miyakogusa Predicted Gene

Lj4g3v3014900.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014900.1 Non Chatacterized Hit- tr|E1ZK35|E1ZK35_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,34.05,1e-17,PseudoU_synth_1,Pseudouridine synthase I, TruA,
alpha/beta domain; no description,Pseudouridine synt,CUFF.52095.1
         (390 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g03090.1                                                       584   e-167
Glyma05g36480.1                                                       429   e-120
Glyma19g02100.1                                                        68   2e-11
Glyma02g36350.1                                                        66   7e-11
Glyma13g17960.1                                                        59   7e-09
Glyma17g04570.1                                                        57   3e-08

>Glyma08g03090.1 
          Length = 423

 Score =  584 bits (1506), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/372 (75%), Positives = 310/372 (83%), Gaps = 21/372 (5%)

Query: 34  MDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFG 93
           M+N R+TE + HYNHT P K+ARW ARES+EFMYARPWQRVNDFYLN V  NLSLPLLFG
Sbjct: 1   MNNLRQTETHVHYNHTHPSKYARWTARESFEFMYARPWQRVNDFYLNIVRANLSLPLLFG 60

Query: 94  AEK--------------------IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFK 133
           A+                     + DHN+  GI A+S   E ESVAS  R GRWAR TFK
Sbjct: 61  AQVCGVLPLTILYVNFVTFYQTLVVDHNDT-GIAALSGSSELESVASEDRSGRWARTTFK 119

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           I+LSYHGGSFDGWQKQPGLNTVQS++EG LG FVDE KTQ LKD+GLPIEG   VAGRTD
Sbjct: 120 IILSYHGGSFDGWQKQPGLNTVQSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIVAGRTD 179

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
           KGVT LQQVCSFYTWKKDVKPRDIEDAI HAAPGKLRVISVSEVSR FHPNFSAKWRRYL
Sbjct: 180 KGVTGLQQVCSFYTWKKDVKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYL 239

Query: 254 YIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLE 313
           YIFPLT+GGY DQSS +GEF+D+ + NEIHDS+SKD+LENE KSY FS+SKVNRLL+KLE
Sbjct: 240 YIFPLTNGGYTDQSSDNGEFYDSFKYNEIHDSASKDELENEKKSYAFSISKVNRLLRKLE 299

Query: 314 GKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLR 373
           GKLLSYKMFARDTKASRN+GPPTECF+YHARA+E +LP  D+ EET+VMC+ELVANRFLR
Sbjct: 300 GKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKLPATDHGEETKVMCVELVANRFLR 359

Query: 374 RMVRVLVATSIR 385
           +MVRVLVATSIR
Sbjct: 360 KMVRVLVATSIR 371


>Glyma05g36480.1 
          Length = 366

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/343 (64%), Positives = 250/343 (72%), Gaps = 47/343 (13%)

Query: 61  ESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESVAS 120
           ES++FMYARPWQRV+DFYLN V  NLSLPLLFGA+ I        I  +           
Sbjct: 1   ESFQFMYARPWQRVDDFYLNIVRANLSLPLLFGAQVILHLLLIIMILELQH--------- 51

Query: 121 RGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQS------------------VIEGP 162
                      F I +S+         KQPGLNTVQ                   ++EG 
Sbjct: 52  -----------FLIHVSW---------KQPGLNTVQRHLSLFVLHFYVYEKSMTYIVEGS 91

Query: 163 LGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIY 222
           LG FVDE KTQ LKD GLPIEG   VAGRTDKGVT LQQVCSFYTWKKDVKPRDIEDAI 
Sbjct: 92  LGKFVDEKKTQLLKDNGLPIEGCAVVAGRTDKGVTGLQQVCSFYTWKKDVKPRDIEDAIN 151

Query: 223 HAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEI 282
           HA PGK RVISVSEVSR FHPNFSAKWRRYLYIFPLT+G Y DQS+ +G F+++ + NEI
Sbjct: 152 HATPGKFRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGRYTDQSNDNGHFYNSCKYNEI 211

Query: 283 HDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYH 342
           HDS+SKD+LEN  KSYMFS SKVNRLL+KLEGKLLSYKMFARDTKASRN+GPPTECF+YH
Sbjct: 212 HDSASKDELENGKKSYMFSTSKVNRLLRKLEGKLLSYKMFARDTKASRNDGPPTECFVYH 271

Query: 343 ARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           ARA+E + P  D+ EET+VMC+ELVA+RFLR+MVRVLVATSIR
Sbjct: 272 ARAMEVKPPTTDHGEETKVMCVELVADRFLRKMVRVLVATSIR 314


>Glyma19g02100.1 
          Length = 341

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 116 ESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQL 175
           E  A  G   R+ R    I  +Y G  + G QK PG  T++  +E  L  +V     +Q 
Sbjct: 10  ECAAGTGTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEVL--YVSGAVPEQ- 66

Query: 176 KDRGLPIEGSVTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVIS 233
            DRG+P       + RTDKGV+A+ QV S  FY     + P  + D +    P ++R+  
Sbjct: 67  -DRGVPKRYDWARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNSNLPSQIRIFG 120

Query: 234 VSEVSRAFHPNFSAKWRRYLYIFPL 258
              V+ +F+       RRY+Y+ P+
Sbjct: 121 YKRVTASFNAKKFCDRRRYVYLIPV 145


>Glyma02g36350.1 
          Length = 548

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 11/139 (7%)

Query: 122 GRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLP 181
           G   R+ R    I  +Y G  + G QK PG  T++  +E  L  +V     +Q  DRG+P
Sbjct: 42  GTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL--YVSGAVPEQ--DRGVP 97

Query: 182 IEGSVTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSR 239
                  + RTDKGV+A+ QV S  FY     + P  + D +    P ++R+     V+ 
Sbjct: 98  KRYDWARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNSNLPSQIRIFGYKRVTA 152

Query: 240 AFHPNFSAKWRRYLYIFPL 258
           +F+       RRY+Y+ P+
Sbjct: 153 SFNAKKFCDRRRYVYLIPV 171


>Glyma13g17960.1 
          Length = 289

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 124 GGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIE 183
           G +W     +IVL+Y G  + GWQ Q    TVQ  +E  L       +  +L+ + L + 
Sbjct: 5   GYKW-----RIVLAYDGTQYAGWQYQESPPTVQCTVEKAL------TQATKLQRKDLCLV 53

Query: 184 GSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHP 243
           G    A RTD GV A  QV  F+T         +  A+    P  +R+  +S  S  FH 
Sbjct: 54  G----ASRTDAGVHAWGQVAHFFTPFNYDNLEQLHAALNGLLPTDIRIREISPASAEFHA 109

Query: 244 NFSAKWRRYLY 254
            FSAK + Y Y
Sbjct: 110 RFSAKSKIYHY 120


>Glyma17g04570.1 
          Length = 281

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 105/261 (40%), Gaps = 50/261 (19%)

Query: 125 GRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEG 184
           G W +  +++VL+Y G  + GWQ Q    TVQ  +E  L       +  +L+ +   + G
Sbjct: 68  GNWYK--WRLVLAYDGTKYAGWQYQQSPPTVQCTLEKAL------TRATKLQRKDFCLVG 119

Query: 185 SVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPN 244
               A RTD GV A  QV  F+T        ++  A+    P  +RV  +S  S  FH  
Sbjct: 120 ----ASRTDAGVHAWGQVAHFFTPFNYDNLEELHAALNGLLPTDIRVREISPASAEFHAR 175

Query: 245 FSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSK 304
           FSA  + Y Y                          +I++ +  D  +     +  SV K
Sbjct: 176 FSAISKIYHY--------------------------KIYNDAIMDPFQRHFAYH--SVYK 207

Query: 305 VNRLLQKLEGKLLSYKM-FARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMC 363
           +N  + +   K    K  F+    AS N+G P    + H    + +       E   ++ 
Sbjct: 208 LNSAVMREAAKYFVGKHDFSAFANASNNDGVPDP--VKHVFRFDLK-------EMGALLQ 258

Query: 364 IELVANRFLRRMVRVLVATSI 384
           IE+  + FL R VR +V + +
Sbjct: 259 IEVEGSGFLYRQVRNMVNSLV 279