Miyakogusa Predicted Gene

Lj4g3v3014230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014230.1 tr|B6U757|B6U757_MAIZE RNA polymerase II
transcriptional coactivator KELP OS=Zea mays PE=2
SV=1,60,3e-17,seg,NULL; RNA POLYMERASE II TRANSCRIPTIONAL
COACTIVATOR,NULL; ssDNA-binding transcriptional regulato,CUFF.52046.1
         (160 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g36750.1                                                       226   6e-60
Glyma08g02810.1                                                       222   1e-58
Glyma03g41890.1                                                       131   3e-31
Glyma19g44550.1                                                        77   6e-15
Glyma04g38740.2                                                        72   4e-13
Glyma04g38740.1                                                        72   4e-13
Glyma06g16250.2                                                        72   4e-13
Glyma06g16250.1                                                        72   4e-13

>Glyma05g36750.1 
          Length = 166

 Score =  226 bits (577), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/164 (70%), Positives = 133/164 (81%), Gaps = 8/164 (4%)

Query: 3   NDPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAF-- 60
           +D ETK RIEE VR++L+ES+MDEVTESKIRKQAS +LGLDLS P FKAFVKQVV+AF  
Sbjct: 2   DDAETKGRIEETVRRVLQESDMDEVTESKIRKQASEQLGLDLSQPHFKAFVKQVVKAFLQ 61

Query: 61  ------XXXXXXXXXXXXXXXGGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVS 114
                                 GGV++ KE+DD+GDLIIC+LS+KR+VTIQDFRGKTLVS
Sbjct: 62  EEEQRQQQQQQDEDDDDEEEEQGGVSKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVS 121

Query: 115 IREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMES 158
           IREYY+KDGK+LPTSKGISLTEEQWSTFKKNVPA+EKAI+KMES
Sbjct: 122 IREYYKKDGKELPTSKGISLTEEQWSTFKKNVPAIEKAIKKMES 165


>Glyma08g02810.1 
          Length = 163

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 130/161 (80%), Gaps = 5/161 (3%)

Query: 3   NDPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFXX 62
           +D ETK RIEE VR+IL+ES+MDEVTESKIRKQAS  LGLDLS P FKAFVKQVV+AF  
Sbjct: 2   DDTETKGRIEETVRRILQESDMDEVTESKIRKQASEHLGLDLSQPYFKAFVKQVVKAFLQ 61

Query: 63  XXXXXXXXXXXXXG-----GGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIRE 117
                              GG ++ KE+DD+GDLIIC+LS+KR+VTIQDFRGKTLVSIRE
Sbjct: 62  EEEQRQKQQQQDEDEEEELGGGSKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVSIRE 121

Query: 118 YYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMES 158
           YY+KDGK+LPTSKGISLTEEQWS FKKNVPA+EKAI+KMES
Sbjct: 122 YYKKDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMES 162


>Glyma03g41890.1 
          Length = 522

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 103/183 (56%), Gaps = 28/183 (15%)

Query: 6   ETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFXXXXX 65
           ET+ ++EE V  IL++SN+ E TE  IR  AS  LG+DLS    K FV+ VV++F     
Sbjct: 4   ETRRKVEEMVLDILKKSNIKEATEFTIRVAASERLGIDLSDTASKHFVRSVVESFLLSVA 63

Query: 66  XXXXXXXXXXG---------------------GGVTQDKEFD-------DDGDLIICKLS 97
                                               + +E +       DD + +IC LS
Sbjct: 64  ANEKSKDAEKKKENEDIAAKNDDVAKKEDVVVANEEESRETEVLPKLKRDDPERVICHLS 123

Query: 98  EKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKME 157
            +R V ++DF+G TLVSIRE+Y KDGK LP SKGISL+ EQWSTFKK+VPA+E+AI+KME
Sbjct: 124 NRRNVAVKDFKGTTLVSIREFYMKDGKPLPGSKGISLSSEQWSTFKKSVPAIEEAIKKME 183

Query: 158 SRI 160
            RI
Sbjct: 184 ERI 186


>Glyma19g44550.1 
          Length = 454

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 42/184 (22%)

Query: 6   ETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFXXXXX 65
           ET+ ++EE V  IL++SN++E TE  IR  AS  LG+DLS  P + FV+ VV+++     
Sbjct: 4   ETRRKVEEMVLDILKKSNIEEATEFTIRVAASERLGIDLSDSPSRHFVRTVVESYLLSVA 63

Query: 66  XXXXXXXX----------------XXGGGVTQDKEFDDDGDLIICK-------------L 96
                                     G  V   K   DD + +IC+             L
Sbjct: 64  ANEISKDAEKKENEDIAAKNDDDVKKGDVVAVPKLKRDDPERVICQESKAGPYGTCFVPL 123

Query: 97  SEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKM 156
             +  V  ++  G+T            +D P    ISL+ EQWSTFKK+VPA+E+AI+KM
Sbjct: 124 GLRLSVQQEELGGETF----------QRDNPR---ISLSSEQWSTFKKSVPAIEEAIKKM 170

Query: 157 ESRI 160
           E RI
Sbjct: 171 EGRI 174


>Glyma04g38740.2 
          Length = 105

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 47/64 (73%)

Query: 91  LIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVE 150
           + IC++S+ R+V +++++G  +V IRE+Y KDGK LP  KGISLT +QW+  + +V  ++
Sbjct: 39  VTICEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEID 98

Query: 151 KAIE 154
           KA+ 
Sbjct: 99  KAVN 102


>Glyma04g38740.1 
          Length = 105

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 47/64 (73%)

Query: 91  LIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVE 150
           + IC++S+ R+V +++++G  +V IRE+Y KDGK LP  KGISLT +QW+  + +V  ++
Sbjct: 39  VTICEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEID 98

Query: 151 KAIE 154
           KA+ 
Sbjct: 99  KAVN 102


>Glyma06g16250.2 
          Length = 105

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 47/64 (73%)

Query: 91  LIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVE 150
           + +C++S+ R+V +++++G  +V IRE+Y KDGK LP  KGISLT +QW+  + +V  ++
Sbjct: 39  ITVCEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEID 98

Query: 151 KAIE 154
           KAI 
Sbjct: 99  KAIN 102


>Glyma06g16250.1 
          Length = 105

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 47/64 (73%)

Query: 91  LIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVE 150
           + +C++S+ R+V +++++G  +V IRE+Y KDGK LP  KGISLT +QW+  + +V  ++
Sbjct: 39  ITVCEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEID 98

Query: 151 KAIE 154
           KAI 
Sbjct: 99  KAIN 102