Miyakogusa Predicted Gene

Lj4g3v3004120.3
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3004120.3 Non Chatacterized Hit- tr|I1KPK3|I1KPK3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.12812
PE,82.58,0,coiled-coil,NULL; seg,NULL; PPR,Pentatricopeptide
repeat,CUFF.52030.3
         (571 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g02680.1                                                       893   0.0  
Glyma05g36860.1                                                       332   6e-91

>Glyma08g02680.1 
          Length = 571

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/574 (77%), Positives = 482/574 (83%), Gaps = 6/574 (1%)

Query: 1   MTLNLSTPSFSRXXXXXXXXXXXXXKFSHNAFPTLSF---PAFSLPNSPRFLNAKASVSE 57
           MTLNL TP FSR               +H   P+L F    +   PN   F++ KASVSE
Sbjct: 1   MTLNLCTPCFSRMLHHPFSSSSSLPN-THTPLPSLLFFSPSSLPNPNQSTFISTKASVSE 59

Query: 58  SRNETSDDHTVSASDQQLLLRISATAKDADEALQMIADNAETNSGGGVVSTSDCCSIISA 117
           S NETSDD   +  DQQL+LR++ATAKDADEAL MIADN+  N G  VVSTSDCCSIISA
Sbjct: 60  SHNETSDDTAANLFDQQLILRLAATAKDADEALLMIADNSSRNDG--VVSTSDCCSIISA 117

Query: 118 ALSRNNPQLALSVFYAMRASFRQVDENGPLVERWKWPRPNANVYTVLINGLAASLRVSDA 177
           AL+RNNPQLALS+FYAMRA+F QV E+GPL ERWKW RPNANVYT+LI GLAA LRVSDA
Sbjct: 118 ALNRNNPQLALSIFYAMRATFHQVGESGPLAERWKWSRPNANVYTLLIQGLAAVLRVSDA 177

Query: 178 LSVIKYICEVGVSPGEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSCAKCRYQYELVSGD 237
           L VI+YICE+GVSPGEEVPFGKIV+CPSCRIAV VAQPQQGIQIVSCAKCRYQYELVSGD
Sbjct: 178 LRVIRYICEIGVSPGEEVPFGKIVKCPSCRIAVGVAQPQQGIQIVSCAKCRYQYELVSGD 237

Query: 238 IVSIQSEEISMDITAWERGLRFLKLMKQSIPSAVHSIVVQTPSGVARTHRFATETVDLPA 297
           IVSI+SEEISMDITAWERGLR++KLMKQSIP+AVHSIVVQTPSG+ARTHRFATETVDLPA
Sbjct: 238 IVSIESEEISMDITAWERGLRYVKLMKQSIPAAVHSIVVQTPSGLARTHRFATETVDLPA 297

Query: 298 QAGERVSVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAPRKEEN 357
           Q GERV+VAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAPRKE N
Sbjct: 298 QEGERVTVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAPRKEVN 357

Query: 358 XXXXXXXXXXXXXAVFATGDAASGLIDPSLPQLLSIVAVSSLAVGSTLNSFVLPQLNQLP 417
                        A+ ATGD ASG+IDP LPQLLS+VAVS+L VGST+N+ VLPQ NQLP
Sbjct: 358 SSLLKPSLIFPLLALLATGDVASGIIDPGLPQLLSVVAVSTLVVGSTVNTVVLPQFNQLP 417

Query: 418 QRSVETTAVKQQLLSQYDVLQSRINGLKEAAEKEIWMLARMCQLENKISAVGEPSYRTRI 477
           Q+SVE TA+KQQLLSQYDVL SRIN LKEAAEKEIWMLARMCQLENKISAVGEP+YRTRI
Sbjct: 418 QKSVEVTAIKQQLLSQYDVLLSRINDLKEAAEKEIWMLARMCQLENKISAVGEPAYRTRI 477

Query: 478 SKVKRVRESLQNSLQGRIELIASYARXXXXXXXXXXXXTDVLAAETASDVDSITEQIEQI 537
           SKVKRVRESLQNSL+GRIELI SYAR            TDVLAAETAS++DSI EQIEQI
Sbjct: 478 SKVKRVRESLQNSLRGRIELIESYARISSMIEIEVEMETDVLAAETASNMDSIKEQIEQI 537

Query: 538 MELENLEERWKMQAEASDEAERLLSSQSMPSEEV 571
           MELENLEERWK+QAEA+DEAERLLSSQ MP +EV
Sbjct: 538 MELENLEERWKIQAEANDEAERLLSSQPMPLDEV 571


>Glyma05g36860.1 
          Length = 317

 Score =  332 bits (851), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 155/177 (87%), Positives = 166/177 (93%)

Query: 165 INGLAASLRVSDALSVIKYICEVGVSPGEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSC 224
           + GLAA LRVSDAL VI+YICEVGVSPGEE+PFGKIV+CPSCRIAV VAQPQQGI IVSC
Sbjct: 1   LQGLAAVLRVSDALRVIRYICEVGVSPGEEIPFGKIVKCPSCRIAVGVAQPQQGILIVSC 60

Query: 225 AKCRYQYELVSGDIVSIQSEEISMDITAWERGLRFLKLMKQSIPSAVHSIVVQTPSGVAR 284
           AKCR QYELV GDIVSI+SEEISMDITAWERGLR++KLMKQSIP+AVHSIVVQTPSG+ R
Sbjct: 61  AKCRCQYELVLGDIVSIESEEISMDITAWERGLRYVKLMKQSIPAAVHSIVVQTPSGLTR 120

Query: 285 THRFATETVDLPAQAGERVSVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHK 341
           THRFATETVDLPAQ GERV+VAVAA SNVYRKVGPFKFSPRAPDFYPGEAM ITN+K
Sbjct: 121 THRFATETVDLPAQEGERVTVAVAALSNVYRKVGPFKFSPRAPDFYPGEAMSITNYK 177