Miyakogusa Predicted Gene
- Lj4g3v2860600.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2860600.2 tr|G7LGI2|G7LGI2_MEDTR Tyrosyl-DNA
phosphodiesterase OS=Medicago truncatula GN=MTR_8g095490 PE=4
SV=,77.02,0,seg,NULL; Tyr-DNA_phospho,Tyrosyl-DNA phosphodiesterase;
HIRAN,HIP116, Rad5p N-terminal; coiled-coil,CUFF.51784.2
(770 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g00870.1 1107 0.0
Glyma05g33270.1 417 e-116
Glyma17g27230.1 214 4e-55
Glyma17g23700.1 151 2e-36
Glyma17g27120.1 139 1e-32
Glyma08g37920.1 132 1e-30
Glyma08g26960.1 86 1e-16
Glyma04g06820.2 56 1e-07
Glyma04g06820.1 56 2e-07
Glyma02g34200.1 51 4e-06
>Glyma08g00870.1
Length = 1087
Score = 1107 bits (2864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/820 (69%), Positives = 611/820 (74%), Gaps = 63/820 (7%)
Query: 1 MLCESKVMDLEAKSEHFGGRGNAGVACVSAMDDNNHDAALRDSVAKDSL---PSCG---- 53
++ ESKV +L+AK V D+ ++ + DSV KD+ PS G
Sbjct: 281 LIGESKVKNLDAKVR------------VDVADEVPNEVKVLDSVGKDNCNPSPSVGGDWQ 328
Query: 54 ------AFHPPPGKNFYLNRLELMDXXXXXXXXXXXXXPELIYPVESISRMFIATFTSDI 107
+++PPPGK FYLNRLE MD PELI+PVES+SRMFIATFTSDI
Sbjct: 329 GKCGGGSYYPPPGKKFYLNRLEFMDRDSLTCHLSISL-PELIHPVESVSRMFIATFTSDI 387
Query: 108 KWFLTYCKIPFHLPVTIACHNTERCWSSRPDEREFVPYQDYPNLVVVCPPFPETIAFGNN 167
KWFLTYCK+PFHLPVTIACHNTERCWSS+PDER FVPY+DYPNLVVVCP FPETIAFGNN
Sbjct: 388 KWFLTYCKVPFHLPVTIACHNTERCWSSKPDERVFVPYRDYPNLVVVCPQFPETIAFGNN 447
Query: 168 RKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFPRGNSVDFASLF 227
RK+QGIACHHPKLIV+QR+DSIR+VITSANLVEKQWN VTNTIWWQDFP SVDFASLF
Sbjct: 448 RKRQGIACHHPKLIVLQRKDSIRIVITSANLVEKQWNSVTNTIWWQDFPHAPSVDFASLF 507
Query: 228 PKIDDGEIHSDSKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYDFEGATGHLVASVPGI 287
PKI D +IH SKCDFAA LAGFMASLVIDVPSQA WITQLTKYDF GATGHLVASVPGI
Sbjct: 508 PKIGDVDIHQGSKCDFAATLAGFMASLVIDVPSQAHWITQLTKYDFGGATGHLVASVPGI 567
Query: 288 HFYRTSVLLESFQTSP-------------------------------FXXXXXXXXXXXX 316
HFYRTSVL ESF+ SP F
Sbjct: 568 HFYRTSVLSESFEASPAHHGGAIRCNGMFIWWNFGLLPSIISSAMQSFGGIVVASVVGLR 627
Query: 317 HLFRTVADSNSARLKTLAVFLRKSCRKANGWLEIVLRRNSSVPADKNAVSVLIPNPDETS 376
HLFRTVADSNSARLK LA FL KSC+ G LEIVLRRN V D+NAV VL+PNPD+T
Sbjct: 628 HLFRTVADSNSARLKALASFLGKSCKNVYGKLEIVLRRNPIVSVDENAVCVLVPNPDQTF 687
Query: 377 EGDYVQLGFLPRDVAKWISPLWDAGFFIFSGCVCPVEALAAALGENSKKVQLILNVSEGP 436
+GD +QLGFL R+VAKW+SPLWD GFF FSG VCP E LAAALGE+ KVQLILNVSEG
Sbjct: 688 QGDCIQLGFLSRNVAKWVSPLWDCGFFKFSGYVCPKEVLAAALGESCNKVQLILNVSEGH 747
Query: 437 HFQDMPKMMQSEQIVAFCSLIASIQRCYGLWRLQEVLNRYRWPESLESEIIYGASSIGSS 496
F+DM KMMQ EQIVAFCSLIASIQRCYGLWRLQEVLNRYRWPESL+SEIIY ASSIGSS
Sbjct: 748 RFKDMSKMMQPEQIVAFCSLIASIQRCYGLWRLQEVLNRYRWPESLKSEIIYSASSIGSS 807
Query: 497 VNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNANEELKNPSVWIIFPTIERVKNAYNG 556
+NSKFLA FS+A GKKSLQHFDSEESDPEWGCWNA+EELKNPSV IIFPTIERVKNAYNG
Sbjct: 808 INSKFLADFSSAVGKKSLQHFDSEESDPEWGCWNASEELKNPSVRIIFPTIERVKNAYNG 867
Query: 557 ILPSRRMLCFAERTWQRLKTFDVLRDAIPHPCERIGHPMHTKVIRRCFWSKGDAPSIGWV 616
ILPSR +LCF E+TWQRLKT ++L DAIPHP ERIGHPMH KV+RRCFWS DAPS+GWV
Sbjct: 868 ILPSRYILCFTEKTWQRLKTSNILHDAIPHPHERIGHPMHIKVMRRCFWSGRDAPSVGWV 927
Query: 617 YCGSHNFSAAAWGRQISNPFGTKASEPKKVDPSVNSGLHICNYELGIIFTFPPIENNYCS 676
Y GSHNFSAAAWGRQISNPF TKA PKK DPSVN GLHICNYELGIIFTFPP ENN C
Sbjct: 928 YSGSHNFSAAAWGRQISNPFRTKADRPKKEDPSVNYGLHICNYELGIIFTFPPTENNGCL 987
Query: 677 EVQRTKLDDIILPFVVPAPKYGFRDRPATMQAMREAMXXXXXXXXXXXXXXXXXXXX--- 733
EV+ TKLDDIILPFVVPAPKY DRPAT QAMRE M
Sbjct: 988 EVKSTKLDDIILPFVVPAPKYRSSDRPATKQAMREVMVELAEREKEKHTEEEMMDELDDE 1047
Query: 734 ---XXXXXXXXATNNVGXXXXXXKAYAEILWSQVDSSQSS 770
ATN V KAYA+ILWSQVD SQSS
Sbjct: 1048 EEYVELPEELEATNYVEQENEDEKAYADILWSQVDLSQSS 1087
>Glyma05g33270.1
Length = 927
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 278/592 (46%), Positives = 300/592 (50%), Gaps = 166/592 (28%)
Query: 236 HSDSKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYDFEGATGHLVASVPGIHFYRTSVL 295
H S CDF AQLAGFMASLVIDVPSQA WITQLTKYDF G L+ + F +L
Sbjct: 445 HCSSNCDFTAQLAGFMASLVIDVPSQAHWITQLTKYDFGGQQDILLLQY--LEFTFIELL 502
Query: 296 L---ESFQTSPFXXXXXXXXXXXXHLFRTVADSNSARLKTLAVFLRKSCRKANGWLEIVL 352
F HLFRTVADSNSARLK F RK IVL
Sbjct: 503 FCQNLLRLLLQFLGSVVASVVGLSHLFRTVADSNSARLKEF--FPRK----------IVL 550
Query: 353 RRNSSVPADKNAVSVLIPNPDETSEGDYVQLGFLPRDVAKWISPLWDAGFFIFSG----- 407
RRN + D+NAVSVL+PNP +T EG + F + IS GF +F
Sbjct: 551 RRNPIISVDENAVSVLVPNPVQTFEG----VRFFRLSITVIISI--QNGFLLFGMPDSSR 604
Query: 408 --CVCPVEALAAALGENSKKVQLILNVSEGPHFQDMPKMMQSEQIVAFCSLIASIQRCYG 465
VCP EAL AALGE+ KVQL LN+SE MMQ EQIVAFCSLIASIQRCYG
Sbjct: 605 FLDVCPKEALTAALGESCNKVQLFLNLSE---------MMQPEQIVAFCSLIASIQRCYG 655
Query: 466 LWRLQE------------------------------------------VLNRYRWPESLE 483
LWRLQE VLN+YRWPES +
Sbjct: 656 LWRLQEINVRLNSFLIWYGSLSNLCGRLPANFQTCKFNGSDVLDVQSWVLNQYRWPESFK 715
Query: 484 SEIIYGASSIGSSVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNANEELKNPSVWII 543
SEIIY ASSIGSS NSKFLA FS++ WGCWNA+EELKNPSV II
Sbjct: 716 SEIIYSASSIGSSANSKFLADFSSS-----------------WGCWNASEELKNPSVRII 758
Query: 544 FPTIERVKNAYNGILPSRRMLCFAERTWQRLKTFDVLRDAIPHPCERIGHPMHTKVIRRC 603
FPTIERVKNAYNGILPSR +LCF E
Sbjct: 759 FPTIERVKNAYNGILPSRYILCFTE----------------------------------- 783
Query: 604 FWSKGDAPSIGWVYCGSHNFSAAAWGRQISNPFGTKASEPKKVDPSVNSGLHICNYELGI 663
VYCGSHNFSAAAWGRQISNPF TK PKK DPSVN G HICNYELGI
Sbjct: 784 ------------VYCGSHNFSAAAWGRQISNPFRTKDDGPKKEDPSVNYGFHICNYELGI 831
Query: 664 IFTFPPIENNYCSEVQRTKLDDIILPFVVPAPKYGFRDRPATMQAMREAMXXXXXXXXXX 723
IFTFPP ENN C EV+ KL+DI LPFV A+RE M
Sbjct: 832 IFTFPPTENNGCPEVKSPKLEDITLPFV----------------ALREVMVELAEREKEK 875
Query: 724 XXXXXXXXXX-----XXXXXXXXATNNVGXXXXXXKAYAEILWSQVDSSQSS 770
ATN V KAYA+ILWSQVDS QSS
Sbjct: 876 HTEEEMKDENDEEEYVELPEELEATNYVEQEKEDEKAYADILWSQVDSFQSS 927
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 75/113 (66%), Gaps = 13/113 (11%)
Query: 131 RCWSSRPDEREFVPYQDYPNLVVVCPP----------FPETIAFGNNRKKQGIACHHPKL 180
RC SS+PD+ F+PYQDYPNLVV+C FP +FGNN K+QGIACHHPKL
Sbjct: 226 RCCSSKPDDGVFMPYQDYPNLVVICRLNHALTIRHFIFPICESFGNNCKRQGIACHHPKL 285
Query: 181 IVVQREDSIRVVITSANLVEKQWNYVT---NTIWWQDFPRGNSVDFASLFPKI 230
IV+QR+DSI++VITSANLVEKQ N +W+D G V + +P++
Sbjct: 286 IVLQRKDSIQIVITSANLVEKQGNSSNCGDKFKFWEDRWMGGEVSLIARYPRL 338
>Glyma17g27230.1
Length = 335
Score = 214 bits (544), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/250 (51%), Positives = 146/250 (58%), Gaps = 44/250 (17%)
Query: 155 CPPFPETI-AFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQ-WNY------- 205
CP FPETI AFGNN K+QGIACHHPKLIV+QR+DSI++VITSANLVEKQ +NY
Sbjct: 103 CPQFPETIIAFGNNCKRQGIACHHPKLIVLQRKDSIQIVITSANLVEKQVYNYYMIQCLY 162
Query: 206 VTNT----IWWQDFPRGNSVDFASLFPKIDDGEIHSDSKCDFAAQLAGFMASLVIDVPSQ 261
V N I + DFP SVDFASLFPK+ + +IH S CDF AQLA FMASLVIDVPSQ
Sbjct: 163 VINMEKLLINFHDFPHATSVDFASLFPKVGNADIHQGSNCDFTAQLARFMASLVIDVPSQ 222
Query: 262 AQWITQLTKYDFEGATGHLVASVPGIHFYRT------------SVL-LESFQTSPFXXXX 308
A WITQLTKYDF G L+ F +VL L S T+ F
Sbjct: 223 AYWITQLTKYDFGGQQDILLLQYLEFTFIELLTQVCHAEILLFAVLGLASLATASFLGSV 282
Query: 309 XXXXXXXXHLFRTVADSNSARLKTLAVFLRKSCRKANGWLEIVLRRNSSVPADKNAVSVL 368
HLF T SC+ LEIVLRRN + D+NAVSVL
Sbjct: 283 VASVVGLSHLFHT------------------SCKNVYRKLEIVLRRNPIIYVDENAVSVL 324
Query: 369 IPNPDETSEG 378
+PNP +T EG
Sbjct: 325 VPNPVQTFEG 334
>Glyma17g23700.1
Length = 531
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 104/187 (55%), Gaps = 25/187 (13%)
Query: 213 QDFPRGNSVDFASLFPKIDDGEIHSDSKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYD 272
DFP VDFASLFPKI + +IH S CDF AQLA FMASLVIDVPSQA WITQLTKYD
Sbjct: 82 HDFPHATYVDFASLFPKIGNADIHQGSNCDFTAQLARFMASLVIDVPSQAHWITQLTKYD 141
Query: 273 FEGATGHLVASVPGIHFYRT------------SVL-LESFQTSPFXXXXXXXXXXXXHLF 319
F G L+ F +VL L S T+ F HLF
Sbjct: 142 FGGQQDILLLQYLEFTFIELLTQVCHAEILLFAVLGLASLATASFLGSVVAYVVGLSHLF 201
Query: 320 RTVADSNSARLKTLAVFLRKSCRKANGWLEIVLRRNSSVPADKNAVSVLIPNPDETSEGD 379
RT+ADSNSARLK F RK IVLRRN + D+NAVSVL+PNP +T EG
Sbjct: 202 RTMADSNSARLKEF--FPRK----------IVLRRNPIISVDENAVSVLVPNPVQTFEGA 249
Query: 380 YVQLGFL 386
LG +
Sbjct: 250 VNSLGII 256
>Glyma17g27120.1
Length = 124
Score = 139 bits (350), Expect = 1e-32, Method: Composition-based stats.
Identities = 73/123 (59%), Positives = 84/123 (68%), Gaps = 9/123 (7%)
Query: 155 CPPFPETI-AFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQ-WNYVTNTIWW 212
CP FPETI AFGNN K+QGIACHHPKLI++QR+DSI++VITSANLVEKQ +NY +
Sbjct: 1 CPQFPETIIAFGNNCKRQGIACHHPKLIILQRKDSIQIVITSANLVEKQVYNYYMIQCLY 60
Query: 213 QDFPRGNSVDFASLFPKIDDGEIHSDSKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYD 272
++ A L + S CDF A LA FM SLVIDVPSQA WITQLTKYD
Sbjct: 61 -------VINMAKLLINFHGYVVEQCSNCDFTALLARFMTSLVIDVPSQAHWITQLTKYD 113
Query: 273 FEG 275
G
Sbjct: 114 SGG 116
>Glyma08g37920.1
Length = 278
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 75/110 (68%), Gaps = 24/110 (21%)
Query: 489 GASSIGSSVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNANEELKNPSVWIIFPTIE 548
GASSIGSS NSKF+A FS++ GKKSLQHFDS+E IE
Sbjct: 193 GASSIGSSANSKFVADFSSSVGKKSLQHFDSKE------------------------YIE 228
Query: 549 RVKNAYNGILPSRRMLCFAERTWQRLKTFDVLRDAIPHPCERIGHPMHTK 598
RVKNAYNGILPSR +LCF E+TWQRLKT ++L DAIPH ERIGHPMH K
Sbjct: 229 RVKNAYNGILPSRYILCFTEKTWQRLKTSNILHDAIPHTHERIGHPMHIK 278
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 116/236 (49%), Gaps = 44/236 (18%)
Query: 155 CPPFPETI-AFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQ 213
CP FPETI AFGNN K+QGIACHHPKLIV+QR+DSI++VIT ANLVEKQ + + +
Sbjct: 1 CPQFPETIIAFGNNCKRQGIACHHPKLIVLQRKDSIQIVITLANLVEKQISLMPLLLILH 60
Query: 214 DFPRGNSVDFASL-FPKIDDGEIHSDSKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYD 272
F S A L F K+ + L + A L
Sbjct: 61 HF----SQKLAMLTFIKVQTMTSLLSWLGLWHLLLLMYPARL------------------ 98
Query: 273 FEGATGHLVASVPGIHFYRTSVLLESFQTSP----FXXXXXXXXXXXXHLFRTVADSNSA 328
TG L + RTS +SF+ SP F HLFRTVADSNSA
Sbjct: 99 ----TGLLSLQNMTLEVNRTSCYFKSFEASPVSTQFLGLVVASVVGLSHLFRTVADSNSA 154
Query: 329 RLKTLAVFLRKSCRKANGWLEIVLRRNSSVPADKNAVSVLIPNPDETSEGDYVQLG 384
RLK F RK IVLRRN + D+N VSVL+PNP +T EG +G
Sbjct: 155 RLKEF--FPRK----------IVLRRNPIIFVDENVVSVLVPNPVQTFEGGASSIG 198
>Glyma08g26960.1
Length = 298
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 50/72 (69%), Gaps = 9/72 (12%)
Query: 506 SAAAGKKSLQHFDS---------EESDPEWGCWNANEELKNPSVWIIFPTIERVKNAYNG 556
S ++ + LQH + +S WGCWNA+EELKNPSV IIFPTIERVKNAYNG
Sbjct: 227 SNSSTRSELQHVNRFNPIFISGFGKSKLLWGCWNASEELKNPSVRIIFPTIERVKNAYNG 286
Query: 557 ILPSRRMLCFAE 568
ILPSR +LCF +
Sbjct: 287 ILPSRYILCFTK 298
>Glyma04g06820.2
Length = 590
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 95 ISRMFIATFTSDIKWFLTYCKIPFHLPVTIACHNTERCWSSRPDER-EFVPYQDYPNLVV 153
I ++ + DI W + C +P + H D R +++ N ++
Sbjct: 179 IKVAILSNYMVDIDWLVPACPALSKVPHVLVIHGES-------DGRVDYIKRSKPANWIL 231
Query: 154 VCPPFPETIAFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQ 213
P P I+FG HH K +++ +RV++ +ANL+ WN + +W Q
Sbjct: 232 HKPSLP--ISFG---------THHSKAMMLIYPQGVRVIVHTANLIYVDWNNKSQGLWMQ 280
Query: 214 DFP--RGNSVDFASLFPKIDDGEIHSDSKC-DFAAQLAGFMASLVIDVPSQAQWITQLTK 270
DFP NS+ S F D E S K +F+ L F+ S+ I PS K
Sbjct: 281 DFPWKDQNSLSKGSGFEN-DLVEYLSVLKWPEFSVNLP-FLGSVSI-CPS------FFRK 331
Query: 271 YDFEGATGHLVASVPGIH 288
+D+ A L+ASVPG H
Sbjct: 332 FDYSDARVRLIASVPGYH 349
>Glyma04g06820.1
Length = 617
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 95 ISRMFIATFTSDIKWFLTYCKIPFHLPVTIACHNTERCWSSRPDER-EFVPYQDYPNLVV 153
I ++ + DI W + C +P + H D R +++ N ++
Sbjct: 179 IKVAILSNYMVDIDWLVPACPALSKVPHVLVIHGES-------DGRVDYIKRSKPANWIL 231
Query: 154 VCPPFPETIAFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQ 213
P P I+FG HH K +++ +RV++ +ANL+ WN + +W Q
Sbjct: 232 HKPSLP--ISFG---------THHSKAMMLIYPQGVRVIVHTANLIYVDWNNKSQGLWMQ 280
Query: 214 DFP--RGNSVDFASLFPKIDDGEIHSDSKC-DFAAQLAGFMASLVIDVPSQAQWITQLTK 270
DFP NS+ S F D E S K +F+ L F+ S+ I PS K
Sbjct: 281 DFPWKDQNSLSKGSGFEN-DLVEYLSVLKWPEFSVNLP-FLGSVSI-CPS------FFRK 331
Query: 271 YDFEGATGHLVASVPGIH 288
+D+ A L+ASVPG H
Sbjct: 332 FDYSDARVRLIASVPGYH 349
>Glyma02g34200.1
Length = 311
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 22/25 (88%)
Query: 643 PKKVDPSVNSGLHICNYELGIIFTF 667
PKK DPSVN G HICNYELGIIFTF
Sbjct: 217 PKKEDPSVNYGFHICNYELGIIFTF 241