Miyakogusa Predicted Gene
- Lj4g3v2827890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2827890.1 tr|A9SFF6|A9SFF6_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,38.32,0.0000001,RINGv,Zinc finger, RING-CH-type;
RING/U-box,NULL; no description,Zinc finger, RING/FYVE/PHD-type;
Th,CUFF.51740.1
(357 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g00500.1 466 e-131
Glyma05g32870.1 119 4e-27
Glyma02g42020.1 58 2e-08
Glyma14g06880.1 57 4e-08
Glyma11g34750.1 56 6e-08
Glyma13g20250.1 54 2e-07
Glyma10g05910.3 53 4e-07
Glyma10g05910.2 53 4e-07
Glyma08g12380.1 53 5e-07
Glyma10g05910.4 53 5e-07
Glyma10g05910.1 53 5e-07
Glyma10g05910.6 52 9e-07
Glyma15g09110.1 52 1e-06
Glyma04g06770.1 51 2e-06
Glyma07g17130.1 50 4e-06
>Glyma08g00500.1
Length = 363
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/361 (65%), Positives = 265/361 (73%), Gaps = 9/361 (2%)
Query: 5 ENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALEFL 64
EN AM KE++ ++ SSSVE DLESH+R+SL+K+ L +CRVCQC ESDK+ DAALEFL
Sbjct: 4 ENTPAMAKEEVCDDGSSSVENVDLESHARISLDKDNGLGTCRVCQCTESDKKADAALEFL 63
Query: 65 GIIP---VLESKGEEVGSDG--VGIAKD---NRNVENESRVVEFVSPDGEVFVCKSDLEL 116
GIIP + ++KGE VGSDG GI ++ +RN E + +VEFVSP+GEVF+CKSDLEL
Sbjct: 64 GIIPGSEMCKTKGE-VGSDGGGDGIPENTSLDRNNEKNAGMVEFVSPNGEVFICKSDLEL 122
Query: 117 GLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSS 176
GL HQD LVELGC CKNDLALVHYACALKWF+NHGSTICEICGHIA+NIRISD NKVV +
Sbjct: 123 GLCHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVGA 182
Query: 177 LKEYEALRERTASGGPGPAQAHGNTGVDPDAVAAIRRQRLSEIALWFCPHXXXXXXXXXX 236
LKEYE LRERTASG PG A H N VDPDAVAAIRRQRLSEIALWFCP+
Sbjct: 183 LKEYEVLRERTASGDPGAAHVHANAVVDPDAVAAIRRQRLSEIALWFCPYNNSHNNNISS 242
Query: 237 XXXXXQVVSEHPLNIVIEDAGPAQNPATKWAVEXXXXXXXXXXXXXXXXXXXXPRVGKKT 296
Q+VSE PL+IV EDA P QNPATKWAVE PRVGKKT
Sbjct: 243 VDTVSQIVSEQPLSIVTEDAAPTQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKT 302
Query: 297 ARGGLHILLGGVCAXXXXXXXXXXXXXXIKYGPARYWAILFIFWFLVFGIWASRTHSAHT 356
AR GLHILLGGVCA IKYGPARYWAILF+FWFLVFGIWASRTH AHT
Sbjct: 303 ARSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHT 362
Query: 357 T 357
T
Sbjct: 363 T 363
>Glyma05g32870.1
Length = 99
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/91 (62%), Positives = 61/91 (67%)
Query: 179 EYEALRERTASGGPGPAQAHGNTGVDPDAVAAIRRQRLSEIALWFCPHXXXXXXXXXXXX 238
EYE LRERTASG G AQ N GVDPD V AIRRQRLSEIALWFCP+
Sbjct: 1 EYEVLRERTASGDLGAAQVQANAGVDPDVVTAIRRQRLSEIALWFCPYNNSHNNNISSVD 60
Query: 239 XXXQVVSEHPLNIVIEDAGPAQNPATKWAVE 269
Q+VS+ PLNIV EDA P QN ATKWAV+
Sbjct: 61 TVSQIVSDQPLNIVTEDAAPVQNHATKWAVK 91
>Glyma02g42020.1
Length = 207
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 52 ESDKRGDAALEFLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCK 111
+ ++R + + I+ V E +G E + + + ++ NE R + +C
Sbjct: 38 DKEQRRSSHVSGTEIVGVCEERGSECSVEVDLVPEVKVHLANEER---------DCRICH 88
Query: 112 SDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLN 171
+++ T +ELGC CK+DLA H CA WF G+ CEICG +A N ++
Sbjct: 89 LSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSVARN--VAGAI 146
Query: 172 KVVSSLKEYEALRERTA-SGGPGP 194
++ + + EA TA S GP P
Sbjct: 147 EIQMTEQWNEANDASTAPSSGPAP 170
>Glyma14g06880.1
Length = 207
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 78 GSDGVGIAKDNRNVENESRV-------VEFVSPDGEVFVCKSDLELGLSHQDTLVELGCC 130
G++ VG+ + R E V V + + + +C +++ T +ELGC
Sbjct: 48 GTEIVGVCEKERGSECSVEVDLVPEVKVHLANVERDCRICHLSMDMTNHESGTSIELGCS 107
Query: 131 CKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
CK+DLA H CA WF G+ CEICG +A N+
Sbjct: 108 CKDDLAAAHKQCAEVWFKIKGNKTCEICGSVARNV 142
>Glyma11g34750.1
Length = 153
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 109 VCKSDLELGLSHQD--------TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGH 160
+C +++ +++ + T +ELGC CK DLA H CA WF G+ +CEICG
Sbjct: 22 ICYLSMDMDMTNHNNESAGNAMTPIELGCSCKEDLAAAHKHCAEAWFKVKGNKVCEICGS 81
Query: 161 IASNIRISDLNKVVSSLKEYEALRE--RTASGGPGPAQAHGNTGVDPDA 207
IA N+ VV+ ++ E E AS P P TG P A
Sbjct: 82 IARNV------TVVAEVQTNEQWNEANNNASMVPPP------TGPAPQA 118
>Glyma13g20250.1
Length = 508
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 4 GENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE- 62
G+ S++P + + + SV G+L ++EKE+ L R +K G++ +
Sbjct: 159 GKKTSSLPVTPIAHSNPGSVHGGNLVYAE--TVEKELNLPIHRSRSVPVLNKEGNSPVRG 216
Query: 63 FLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQD 122
I+P E++ S + + V+NE + + +C +L G D
Sbjct: 217 MFRIVPTTLRLDEKIASATPMTSPIHDTVKNEDGGEDIPEEEAVCRICFVELGEG---AD 273
Query: 123 TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
T +L C CK +L+L H C +KWF G+ C++C N+ ++ L
Sbjct: 274 TF-KLECSCKGELSLAHRECVVKWFTIKGNRTCDVCKQEVQNLPVTLL 320
>Glyma10g05910.3
Length = 361
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 4 GENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE- 62
G+ S++P + + SV G+L + +KE+ R +K G++ +
Sbjct: 107 GKKTSSLPVTAIAYSNPGSVHGGNLAFAE--TAKKELNFPIRRSRSAPMLNKEGNSPVRG 164
Query: 63 FLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQD 122
I+P E++ + + + V+NE + + +C +L G
Sbjct: 165 MFRIVPTTLRLDEKIATTPPMTSPIHDTVKNEDGGEDIPEEEAVCRICMVELGEG----G 220
Query: 123 TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+L C CK DL+L H CA+KWF G+ C++C N+ ++ L
Sbjct: 221 NTFKLECGCKGDLSLAHRGCAVKWFTIKGNRTCDVCKQEVQNLTVTLL 268
>Glyma10g05910.2
Length = 361
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 4 GENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE- 62
G+ S++P + + SV G+L + +KE+ R +K G++ +
Sbjct: 107 GKKTSSLPVTAIAYSNPGSVHGGNLAFAE--TAKKELNFPIRRSRSAPMLNKEGNSPVRG 164
Query: 63 FLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQD 122
I+P E++ + + + V+NE + + +C +L G
Sbjct: 165 MFRIVPTTLRLDEKIATTPPMTSPIHDTVKNEDGGEDIPEEEAVCRICMVELGEG----G 220
Query: 123 TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+L C CK DL+L H CA+KWF G+ C++C N+ ++ L
Sbjct: 221 NTFKLECGCKGDLSLAHRGCAVKWFTIKGNRTCDVCKQEVQNLTVTLL 268
>Glyma08g12380.1
Length = 277
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
L++LGC CK++L +VH CA WF G+ +CEICG A N+
Sbjct: 176 LIQLGCACKDELGIVHSHCAEAWFKLKGNRLCEICGETAKNV 217
>Glyma10g05910.4
Length = 349
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 4 GENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE- 62
G+ S++P + + SV G+L + +KE+ R +K G++ +
Sbjct: 107 GKKTSSLPVTAIAYSNPGSVHGGNLAFAE--TAKKELNFPIRRSRSAPMLNKEGNSPVRG 164
Query: 63 FLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQD 122
I+P E++ + + + V+NE + + +C +L G
Sbjct: 165 MFRIVPTTLRLDEKIATTPPMTSPIHDTVKNEDGGEDIPEEEAVCRICMVELGEG----G 220
Query: 123 TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+L C CK DL+L H CA+KWF G+ C++C N+ ++ L
Sbjct: 221 NTFKLECGCKGDLSLAHRGCAVKWFTIKGNRTCDVCKQEVQNLTVTLL 268
>Glyma10g05910.1
Length = 454
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 4 GENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE- 62
G+ S++P + + SV G+L + +KE+ R +K G++ +
Sbjct: 107 GKKTSSLPVTAIAYSNPGSVHGGNLAFAE--TAKKELNFPIRRSRSAPMLNKEGNSPVRG 164
Query: 63 FLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQD 122
I+P E++ + + + V+NE + + +C +L G
Sbjct: 165 MFRIVPTTLRLDEKIATTPPMTSPIHDTVKNEDGGEDIPEEEAVCRICMVELGEG----G 220
Query: 123 TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+L C CK DL+L H CA+KWF G+ C++C N+ ++ L
Sbjct: 221 NTFKLECGCKGDLSLAHRGCAVKWFTIKGNRTCDVCKQEVQNLTVTLL 268
>Glyma10g05910.6
Length = 305
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 4 GENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE- 62
G+ S++P + + SV G+L + +KE+ R +K G++ +
Sbjct: 107 GKKTSSLPVTAIAYSNPGSVHGGNLAFAE--TAKKELNFPIRRSRSAPMLNKEGNSPVRG 164
Query: 63 FLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQD 122
I+P E++ + + + V+NE + + +C +L G
Sbjct: 165 MFRIVPTTLRLDEKIATTPPMTSPIHDTVKNEDGGEDIPEEEAVCRICMVELGEG----G 220
Query: 123 TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+L C CK DL+L H CA+KWF G+ C++C N+ ++ L
Sbjct: 221 NTFKLECGCKGDLSLAHRGCAVKWFTIKGNRTCDVCKQEVQNLTVTLL 268
>Glyma15g09110.1
Length = 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
L++LGC CK++L + H CA WF G+ +CEICG A N+
Sbjct: 137 LIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGETAENV 178
>Glyma04g06770.1
Length = 289
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 122 DTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
+ L++LGC CK++L + H CA WF G+ +CEICG A N+
Sbjct: 186 EDLIQLGCACKDELGIAHGHCAEAWFKLKGNRLCEICGEAAKNV 229
>Glyma07g17130.1
Length = 232
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 109 VCKSDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI--- 165
+C LE ++LGC CK+DLA H CA WF G+ CEIC +A N+
Sbjct: 110 ICHMGLESDSHESGAPIQLGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGG 169
Query: 166 ------RISDLNKVVSS 176
+SD+N ++
Sbjct: 170 NEESTEHLSDVNNATTA 186